Saimiri sciureus papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyoomikronpapillomavirus; Dyoomikronpapillomavirus 1

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W5QK87|W5QK87_9PAPI Protein E6 OS=Saimiri sciureus papillomavirus 1 OX=990304 GN=E6 PE=3 SV=1
MM1 pKa = 7.62IGAQPTLKK9 pKa = 10.62DD10 pKa = 3.71IILSEE15 pKa = 4.26LPEE18 pKa = 4.35PVDD21 pKa = 3.83LQCNEE26 pKa = 4.91DD27 pKa = 3.17IDD29 pKa = 4.59YY30 pKa = 11.59DD31 pKa = 3.94EE32 pKa = 4.85VDD34 pKa = 3.6NNEE37 pKa = 4.81DD38 pKa = 3.25VTQGHH43 pKa = 6.85AGLYY47 pKa = 9.4QVLCQCYY54 pKa = 8.01TCYY57 pKa = 10.24RR58 pKa = 11.84DD59 pKa = 3.99LRR61 pKa = 11.84LLVKK65 pKa = 9.71CTAEE69 pKa = 5.16DD70 pKa = 3.55VDD72 pKa = 4.32ILNSLLTGTLEE83 pKa = 4.4IVCPLCARR91 pKa = 11.84GMNN94 pKa = 3.73

Molecular weight: 10.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W5QK88|W5QK88_9PAPI Major capsid protein L1 OS=Saimiri sciureus papillomavirus 1 OX=990304 GN=L1 PE=3 SV=1
MM1 pKa = 8.08DD2 pKa = 5.17FPTSIEE8 pKa = 4.22GLCSEE13 pKa = 4.82LGIVAWHH20 pKa = 6.26LQLNCIFCTCHH31 pKa = 8.24LDD33 pKa = 4.46IGDD36 pKa = 4.45LCAFMHH42 pKa = 6.85NGLKK46 pKa = 10.59LKK48 pKa = 9.39WIKK51 pKa = 10.48SFPYY55 pKa = 9.68AACHH59 pKa = 6.46RR60 pKa = 11.84CTLLQARR67 pKa = 11.84VLAWRR72 pKa = 11.84HH73 pKa = 3.87QTRR76 pKa = 11.84AAYY79 pKa = 9.77AVTVEE84 pKa = 4.35EE85 pKa = 5.47DD86 pKa = 3.16CGQPLGNIQIRR97 pKa = 11.84CVVCTAILRR106 pKa = 11.84PEE108 pKa = 4.15DD109 pKa = 3.58KK110 pKa = 10.49LRR112 pKa = 11.84HH113 pKa = 5.86RR114 pKa = 11.84EE115 pKa = 3.56HH116 pKa = 6.48HH117 pKa = 6.36RR118 pKa = 11.84RR119 pKa = 11.84FILAAGYY126 pKa = 8.11WRR128 pKa = 11.84GRR130 pKa = 11.84CGHH133 pKa = 6.73CWNTALL139 pKa = 5.31

Molecular weight: 15.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2252

94

647

375.3

41.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.437 ± 0.755

2.798 ± 0.845

5.95 ± 0.429

4.751 ± 0.603

3.552 ± 0.421

6.883 ± 0.162

2.131 ± 0.508

3.597 ± 0.44

4.574 ± 0.81

7.904 ± 0.681

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.998 ± 0.479

3.686 ± 0.595

6.528 ± 1.27

4.352 ± 0.598

5.506 ± 0.369

6.927 ± 0.772

7.993 ± 0.694

6.927 ± 0.932

1.776 ± 0.405

3.73 ± 0.335
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski