Equus caballus papillomavirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyoiotapapillomavirus; Dyoiotapapillomavirus 1

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E7C0H6|E7C0H6_9PAPI Major capsid protein L1 OS=Equus caballus papillomavirus 3 OX=940834 GN=L1 PE=3 SV=1
MM1 pKa = 7.1TSGRR5 pKa = 11.84RR6 pKa = 11.84KK7 pKa = 9.55RR8 pKa = 11.84RR9 pKa = 11.84AADD12 pKa = 3.51TTDD15 pKa = 3.03TPPRR19 pKa = 11.84KK20 pKa = 9.3RR21 pKa = 11.84RR22 pKa = 11.84PRR24 pKa = 11.84AAVEE28 pKa = 4.11DD29 pKa = 4.33IYY31 pKa = 11.17RR32 pKa = 11.84GCKK35 pKa = 9.21PFNTCPEE42 pKa = 4.13DD43 pKa = 3.46VVNRR47 pKa = 11.84VEE49 pKa = 4.1NKK51 pKa = 7.59TWADD55 pKa = 4.73RR56 pKa = 11.84LLQWLGSVIYY66 pKa = 10.66LGGLGIGSGRR76 pKa = 11.84GTGGGTGYY84 pKa = 10.72RR85 pKa = 11.84PLGSTNRR92 pKa = 11.84GVVVGGGSRR101 pKa = 11.84AVRR104 pKa = 11.84PPPLVVDD111 pKa = 4.33TIGPVDD117 pKa = 3.81AEE119 pKa = 4.29VLEE122 pKa = 4.72MIPLQPLEE130 pKa = 4.37PGGPSVVSGSDD141 pKa = 2.97GGVLVSEE148 pKa = 5.19GGSLPPEE155 pKa = 4.07IPGVLDD161 pKa = 3.42GGGPEE166 pKa = 4.3DD167 pKa = 5.1SIPARR172 pKa = 11.84DD173 pKa = 3.62PAVLQVGEE181 pKa = 4.24GDD183 pKa = 3.44TGNSHH188 pKa = 7.35VITPAIEE195 pKa = 3.92RR196 pKa = 11.84PGFSGSSRR204 pKa = 11.84DD205 pKa = 2.87SFYY208 pKa = 10.78IVDD211 pKa = 3.61SGSRR215 pKa = 11.84GSVVGEE221 pKa = 4.38DD222 pKa = 3.52IEE224 pKa = 5.82LVDD227 pKa = 5.48LPRR230 pKa = 11.84ASTPEE235 pKa = 3.99TTGDD239 pKa = 3.34ALTRR243 pKa = 11.84GLGSRR248 pKa = 11.84KK249 pKa = 8.24YY250 pKa = 8.36QQVYY254 pKa = 9.29VEE256 pKa = 4.91NPAFVYY262 pKa = 10.81NPTEE266 pKa = 3.8LVAFGDD272 pKa = 3.87TWDD275 pKa = 3.92GATDD279 pKa = 3.57SFSYY283 pKa = 10.88DD284 pKa = 3.41PVVASPQAAPDD295 pKa = 3.64EE296 pKa = 4.54LFTDD300 pKa = 4.11IVHH303 pKa = 7.51LGRR306 pKa = 11.84QMYY309 pKa = 9.68EE310 pKa = 3.69RR311 pKa = 11.84GRR313 pKa = 11.84EE314 pKa = 3.74GLLRR318 pKa = 11.84VGRR321 pKa = 11.84VGRR324 pKa = 11.84RR325 pKa = 11.84GTIQTRR331 pKa = 11.84AGTQIGPQVHH341 pKa = 6.66FFHH344 pKa = 7.51DD345 pKa = 4.74LSPILPVQEE354 pKa = 4.28EE355 pKa = 4.81VEE357 pKa = 4.32LTTFPRR363 pKa = 11.84APEE366 pKa = 3.98FEE368 pKa = 4.45STNSEE373 pKa = 3.57EE374 pKa = 4.31TAFTEE379 pKa = 4.55VDD381 pKa = 3.82LQSEE385 pKa = 4.33PSSYY389 pKa = 11.13SDD391 pKa = 3.22TYY393 pKa = 11.22LVEE396 pKa = 5.22DD397 pKa = 4.83DD398 pKa = 4.17SVSVTGHH405 pKa = 6.54LVFSDD410 pKa = 3.48EE411 pKa = 4.83GGSLTDD417 pKa = 3.41NVHH420 pKa = 7.22PINVPLRR427 pKa = 11.84GSAGVGLLSVQGTTDD442 pKa = 3.26NLTSNSLTPALQPPQPGGGDD462 pKa = 3.19RR463 pKa = 11.84EE464 pKa = 4.64VVVNMYY470 pKa = 9.42PYY472 pKa = 10.79SIMSFLHH479 pKa = 4.2YY480 pKa = 9.76RR481 pKa = 11.84RR482 pKa = 11.84RR483 pKa = 11.84RR484 pKa = 11.84KK485 pKa = 9.5RR486 pKa = 11.84GYY488 pKa = 10.24VYY490 pKa = 10.6FSDD493 pKa = 4.34VILAII498 pKa = 4.24

Molecular weight: 53.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E7C0H5|E7C0H5_9PAPI Minor capsid protein L2 OS=Equus caballus papillomavirus 3 OX=940834 GN=L2 PE=3 SV=1
II1 pKa = 7.28PKK3 pKa = 10.15GYY5 pKa = 8.95TIVRR9 pKa = 11.84GPLKK13 pKa = 10.66SIMRR17 pKa = 11.84TLQLKK22 pKa = 9.72QKK24 pKa = 9.13STLKK28 pKa = 10.69QMFGKK33 pKa = 10.1SCFKK37 pKa = 10.22TKK39 pKa = 10.5HH40 pKa = 5.74FLLSPAEE47 pKa = 4.08LPRR50 pKa = 11.84RR51 pKa = 11.84TPQSLLDD58 pKa = 3.93LAYY61 pKa = 10.36QAATSRR67 pKa = 11.84TAQQRR72 pKa = 11.84SPVYY76 pKa = 10.08FPLRR80 pKa = 11.84LPPCLLNSSLYY91 pKa = 10.12QRR93 pKa = 11.84NCYY96 pKa = 10.07RR97 pKa = 11.84EE98 pKa = 4.12VLRR101 pKa = 11.84GTAEE105 pKa = 4.04ALGEE109 pKa = 4.08AAHH112 pKa = 6.16TGAWGPLPMSPVPGPYY128 pKa = 10.18ARR130 pKa = 11.84GEE132 pKa = 4.08LDD134 pKa = 3.91SYY136 pKa = 11.1LPPPACRR143 pKa = 11.84RR144 pKa = 11.84LYY146 pKa = 10.28RR147 pKa = 11.84AQLYY151 pKa = 8.61HH152 pKa = 5.93QRR154 pKa = 11.84QVLLLYY160 pKa = 9.88LQYY163 pKa = 10.84YY164 pKa = 7.6PQVDD168 pKa = 3.99AGPPAGPP175 pKa = 3.83

Molecular weight: 19.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2456

93

621

350.9

39.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.067 ± 0.73

2.484 ± 0.562

5.7 ± 0.61

5.619 ± 0.4

3.379 ± 0.296

7.573 ± 1.106

2.239 ± 0.313

3.176 ± 0.262

4.56 ± 0.818

8.958 ± 0.709

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.954 ± 0.314

2.972 ± 0.378

7.085 ± 0.691

4.723 ± 0.558

6.678 ± 0.56

8.103 ± 0.55

5.863 ± 0.621

7.329 ± 0.705

1.792 ± 0.412

3.746 ± 0.39
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski