Friedmanniella luteola

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Friedmanniella

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4260 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H1ZQI5|A0A1H1ZQI5_9ACTN CBS domain-containing protein OS=Friedmanniella luteola OX=546871 GN=SAMN04488543_3944 PE=4 SV=1
MM1 pKa = 6.49TVAMAAQEE9 pKa = 4.28FEE11 pKa = 5.18LLVQQALDD19 pKa = 3.86EE20 pKa = 4.64VPDD23 pKa = 3.68EE24 pKa = 4.36LLALVEE30 pKa = 4.11NCVILVEE37 pKa = 4.69DD38 pKa = 5.14APPPDD43 pKa = 3.49LAGLLGLYY51 pKa = 10.44DD52 pKa = 4.05GVPLTEE58 pKa = 5.17RR59 pKa = 11.84GDD61 pKa = 3.91FYY63 pKa = 11.66AGVLPDD69 pKa = 4.82RR70 pKa = 11.84ILIYY74 pKa = 10.24RR75 pKa = 11.84LPILAVCDD83 pKa = 3.43THH85 pKa = 7.69EE86 pKa = 4.45DD87 pKa = 3.65VVEE90 pKa = 4.22EE91 pKa = 3.77VHH93 pKa = 5.75ITVVHH98 pKa = 6.69EE99 pKa = 4.08IAHH102 pKa = 6.16HH103 pKa = 6.46FGIDD107 pKa = 3.52DD108 pKa = 4.21DD109 pKa = 4.45RR110 pKa = 11.84LHH112 pKa = 6.48EE113 pKa = 4.68LGYY116 pKa = 10.74DD117 pKa = 3.3

Molecular weight: 12.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H1LWI3|A0A1H1LWI3_9ACTN Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase OS=Friedmanniella luteola OX=546871 GN=SAMN04488543_0473 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.72HH17 pKa = 5.74RR18 pKa = 11.84KK19 pKa = 7.87LLKK22 pKa = 8.37RR23 pKa = 11.84TRR25 pKa = 11.84IQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84AGKK33 pKa = 9.79

Molecular weight: 4.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4260

0

4260

1392974

29

5196

327.0

34.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.0 ± 0.05

0.664 ± 0.01

6.171 ± 0.035

5.145 ± 0.035

2.682 ± 0.025

9.452 ± 0.036

2.113 ± 0.019

2.709 ± 0.032

1.54 ± 0.027

10.89 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.526 ± 0.014

1.551 ± 0.019

6.157 ± 0.03

2.917 ± 0.022

8.019 ± 0.05

5.121 ± 0.029

6.203 ± 0.053

9.735 ± 0.035

1.524 ± 0.016

1.881 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski