Castor canadensis papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyosigmapapillomavirus; Dyosigmapapillomavirus 1

Average proteome isoelectric point is 5.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V9P8X8|V9P8X8_9PAPI Protein E7 OS=Castor canadensis papillomavirus 1 OX=1352235 GN=E7 PE=3 SV=1
MM1 pKa = 7.61IGPHH5 pKa = 6.43PTLKK9 pKa = 10.72DD10 pKa = 2.98IVLQEE15 pKa = 4.07VPEE18 pKa = 4.27VVDD21 pKa = 4.15LNCYY25 pKa = 7.88EE26 pKa = 4.15QVPPEE31 pKa = 5.1DD32 pKa = 3.4ILLEE36 pKa = 4.14EE37 pKa = 4.46VGRR40 pKa = 11.84VSDD43 pKa = 4.53LYY45 pKa = 11.17QVVCHH50 pKa = 6.45CARR53 pKa = 11.84CDD55 pKa = 3.45HH56 pKa = 7.37LIRR59 pKa = 11.84LTLIAEE65 pKa = 4.36HH66 pKa = 6.85AALQVLHH73 pKa = 6.49QLLCGDD79 pKa = 4.27ISIVCPSCAARR90 pKa = 11.84LL91 pKa = 3.67

Molecular weight: 10.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V9P889|V9P889_9PAPI Minor capsid protein L2 OS=Castor canadensis papillomavirus 1 OX=1352235 GN=L2 PE=3 SV=1
MM1 pKa = 7.28EE2 pKa = 4.34QQSLPKK8 pKa = 9.61TVRR11 pKa = 11.84DD12 pKa = 3.92LSAHH16 pKa = 5.4LQVTFVQLLLPCKK29 pKa = 10.09FCYY32 pKa = 10.33SFLTTNDD39 pKa = 3.37KK40 pKa = 11.21LLFDD44 pKa = 4.84LFGLQLVYY52 pKa = 10.59RR53 pKa = 11.84GGYY56 pKa = 9.14PYY58 pKa = 10.6GACQPCLSSCCKK70 pKa = 10.01IEE72 pKa = 4.11FLMFYY77 pKa = 10.54EE78 pKa = 4.68DD79 pKa = 3.64TLDD82 pKa = 3.51GHH84 pKa = 6.39GVVATTGKK92 pKa = 10.08SLQEE96 pKa = 3.87HH97 pKa = 6.58PVRR100 pKa = 11.84CVLCAKK106 pKa = 10.5LLTPSEE112 pKa = 4.29KK113 pKa = 10.72DD114 pKa = 3.43SVVHH118 pKa = 6.75FGEE121 pKa = 4.6KK122 pKa = 6.9VHH124 pKa = 6.46KK125 pKa = 10.32VRR127 pKa = 11.84GRR129 pKa = 11.84FKK131 pKa = 10.84AKK133 pKa = 10.39CGLCRR138 pKa = 11.84LACII142 pKa = 4.76

Molecular weight: 15.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1870

91

612

374.0

41.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.364 ± 0.414

2.193 ± 0.759

6.898 ± 0.519

5.348 ± 0.317

5.027 ± 0.365

6.898 ± 1.011

2.246 ± 0.338

5.08 ± 0.63

4.064 ± 0.836

9.144 ± 0.98

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.711 ± 0.396

3.85 ± 0.598

6.043 ± 0.782

4.706 ± 0.345

6.043 ± 0.394

7.754 ± 0.82

5.722 ± 0.238

6.631 ± 0.785

1.07 ± 0.376

3.209 ± 0.289
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski