Torque teno midi virus 9

Taxonomy: Viruses; Anelloviridae; Gammatorquevirus

Average proteome isoelectric point is 7.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7VLY4|A7VLY4_9VIRU Capsid protein OS=Torque teno midi virus 9 OX=2065050 PE=3 SV=1
MM1 pKa = 6.26TAYY4 pKa = 11.0YY5 pKa = 10.7NFARR9 pKa = 11.84KK10 pKa = 7.37TPYY13 pKa = 10.49NNCTHH18 pKa = 5.76EE19 pKa = 4.21QLWISSFNDD28 pKa = 2.9SHH30 pKa = 7.75DD31 pKa = 3.99AFCGCTKK38 pKa = 10.28PVTHH42 pKa = 6.68MLSILFPEE50 pKa = 4.56GHH52 pKa = 7.15RR53 pKa = 11.84DD54 pKa = 3.12LDD56 pKa = 3.59LTIRR60 pKa = 11.84QILQRR65 pKa = 11.84EE66 pKa = 4.19KK67 pKa = 11.01EE68 pKa = 3.98DD69 pKa = 4.02TICLFGGTDD78 pKa = 3.33EE79 pKa = 5.23RR80 pKa = 11.84DD81 pKa = 3.29GGEE84 pKa = 4.02AQEE87 pKa = 5.31DD88 pKa = 4.03PGTKK92 pKa = 10.07EE93 pKa = 4.32KK94 pKa = 10.68DD95 pKa = 3.16IPDD98 pKa = 3.48ATEE101 pKa = 3.82EE102 pKa = 4.35EE103 pKa = 4.46FTKK106 pKa = 10.26IDD108 pKa = 4.37VEE110 pKa = 4.42DD111 pKa = 4.31LLAAAADD118 pKa = 3.87ADD120 pKa = 4.2TPRR123 pKa = 5.39

Molecular weight: 13.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7VLY4|A7VLY4_9VIRU Capsid protein OS=Torque teno midi virus 9 OX=2065050 PE=3 SV=1
MM1 pKa = 7.42PFWWNRR7 pKa = 11.84RR8 pKa = 11.84KK9 pKa = 10.02RR10 pKa = 11.84WWRR13 pKa = 11.84GARR16 pKa = 11.84RR17 pKa = 11.84PWYY20 pKa = 9.28KK21 pKa = 9.87RR22 pKa = 11.84KK23 pKa = 10.09RR24 pKa = 11.84YY25 pKa = 5.49TRR27 pKa = 11.84RR28 pKa = 11.84YY29 pKa = 8.79RR30 pKa = 11.84RR31 pKa = 11.84RR32 pKa = 11.84IYY34 pKa = 10.06KK35 pKa = 9.4NRR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84PTRR43 pKa = 11.84RR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84HH50 pKa = 4.09TKK52 pKa = 8.95VRR54 pKa = 11.84RR55 pKa = 11.84KK56 pKa = 9.79RR57 pKa = 11.84QTIPVRR63 pKa = 11.84QWQPEE68 pKa = 4.08RR69 pKa = 11.84IVRR72 pKa = 11.84CKK74 pKa = 10.24IKK76 pKa = 10.45GISVIVLGGEE86 pKa = 4.59GKK88 pKa = 9.84QFQCYY93 pKa = 7.34TNEE96 pKa = 3.94ATTWTPLRR104 pKa = 11.84TPGGGGFGVEE114 pKa = 4.91KK115 pKa = 9.97YY116 pKa = 8.82TLSHH120 pKa = 7.24LYY122 pKa = 10.15DD123 pKa = 3.17QYY125 pKa = 12.11KK126 pKa = 9.93FGNNIWTKK134 pKa = 9.71TNILTDD140 pKa = 3.74LVQYY144 pKa = 9.32LGCKK148 pKa = 9.34FVFYY152 pKa = 10.28RR153 pKa = 11.84HH154 pKa = 5.74QYY156 pKa = 8.78VDD158 pKa = 4.79FIVKK162 pKa = 9.78YY163 pKa = 10.62SRR165 pKa = 11.84NLPMTIEE172 pKa = 4.24KK173 pKa = 8.92LTYY176 pKa = 9.93PHH178 pKa = 6.53THH180 pKa = 6.21PQALLLSRR188 pKa = 11.84HH189 pKa = 5.48KK190 pKa = 10.52RR191 pKa = 11.84IIPSRR196 pKa = 11.84VTKK199 pKa = 9.59PHH201 pKa = 5.51GKK203 pKa = 9.07NRR205 pKa = 11.84VIIKK209 pKa = 10.03IKK211 pKa = 7.5PTRR214 pKa = 11.84VVLKK218 pKa = 10.05KK219 pKa = 9.81WFFQEE224 pKa = 4.32TFDD227 pKa = 3.95TTGLCSIYY235 pKa = 10.81AAACDD240 pKa = 4.15LNYY243 pKa = 10.27PHH245 pKa = 7.52IGATSQNQIITLFGLNQSFYY265 pKa = 11.7SKK267 pKa = 10.85GNWGAVVQTGYY278 pKa = 10.61QPYY281 pKa = 9.97PSVTTFTYY289 pKa = 8.76KK290 pKa = 9.83TAATKK295 pKa = 10.09QVEE298 pKa = 4.75TFNKK302 pKa = 6.69PTTYY306 pKa = 9.65EE307 pKa = 3.76ASVSYY312 pKa = 7.61TTGWFNPKK320 pKa = 9.79LMQLTEE326 pKa = 4.29YY327 pKa = 8.73VTPQQLAKK335 pKa = 9.93PVLAFRR341 pKa = 11.84YY342 pKa = 8.66NAQLDD347 pKa = 3.78NGKK350 pKa = 10.67GNSVWFKK357 pKa = 11.3SILTEE362 pKa = 4.48DD363 pKa = 3.82FSKK366 pKa = 11.05PKK368 pKa = 10.16VDD370 pKa = 3.42SDD372 pKa = 5.43LIISDD377 pKa = 3.65MPIWQALYY385 pKa = 10.84GFTDD389 pKa = 4.95FIKK392 pKa = 10.6AVKK395 pKa = 9.58PDD397 pKa = 3.95PNFLASYY404 pKa = 9.94ILLIEE409 pKa = 4.26TRR411 pKa = 11.84FVEE414 pKa = 4.66PFSSHH419 pKa = 4.97ATGNYY424 pKa = 7.61WIPIDD429 pKa = 3.85SSFVTGKK436 pKa = 10.71GPYY439 pKa = 7.45NTPIGDD445 pKa = 3.61YY446 pKa = 10.38TKK448 pKa = 10.26TKK450 pKa = 9.64WFPTVKK456 pKa = 10.25NQQEE460 pKa = 4.5SINAFVKK467 pKa = 10.38AGPYY471 pKa = 9.48IPRR474 pKa = 11.84LQDD477 pKa = 3.22EE478 pKa = 4.94KK479 pKa = 11.18KK480 pKa = 9.56STWEE484 pKa = 3.37LHH486 pKa = 6.38AFYY489 pKa = 10.53QFYY492 pKa = 10.58LKK494 pKa = 10.27WGGTYY499 pKa = 9.08TEE501 pKa = 4.38EE502 pKa = 4.16TQVADD507 pKa = 3.83PSKK510 pKa = 10.02QGTYY514 pKa = 10.93VMPSFIQEE522 pKa = 3.89KK523 pKa = 10.03LQIINPAKK531 pKa = 10.05QKK533 pKa = 10.3AAAMLHH539 pKa = 5.63CWDD542 pKa = 3.89YY543 pKa = 11.43RR544 pKa = 11.84RR545 pKa = 11.84GLITQSAIKK554 pKa = 9.72RR555 pKa = 11.84ICEE558 pKa = 4.0DD559 pKa = 3.42QPTDD563 pKa = 3.11TDD565 pKa = 3.93FQTGSEE571 pKa = 4.19SSQPLKK577 pKa = 10.64KK578 pKa = 10.04KK579 pKa = 10.63KK580 pKa = 9.1KK581 pKa = 4.62TTKK584 pKa = 9.79EE585 pKa = 3.47LPYY588 pKa = 9.98PPKK591 pKa = 10.53EE592 pKa = 3.97KK593 pKa = 11.0EE594 pKa = 4.04EE595 pKa = 3.98LQKK598 pKa = 11.11CLLSLYY604 pKa = 9.95EE605 pKa = 3.95EE606 pKa = 5.22SISQEE611 pKa = 3.53IPQTQNLQEE620 pKa = 5.42LIQQQQQQQQQLKK633 pKa = 9.22YY634 pKa = 9.43NILKK638 pKa = 10.2IISEE642 pKa = 4.64LKK644 pKa = 9.95QQQQLLGLQTGLVLL658 pKa = 4.97

Molecular weight: 77.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1322

123

658

330.5

38.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.749 ± 1.154

1.891 ± 0.422

4.917 ± 1.194

5.825 ± 0.921

4.236 ± 0.405

4.539 ± 0.575

2.572 ± 0.67

5.295 ± 0.826

8.623 ± 0.825

7.337 ± 0.193

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.059 ± 0.096

4.085 ± 0.249

5.976 ± 0.869

6.581 ± 0.989

6.203 ± 0.773

6.732 ± 2.464

9.228 ± 0.594

3.48 ± 0.749

1.664 ± 0.688

4.009 ± 1.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski