Dankookia rubra

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Dankookia

Average proteome isoelectric point is 7.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7087 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V3AA02|A0A4V3AA02_9PROT IS21 family transposase OS=Dankookia rubra OX=1442381 GN=E2C06_17690 PE=4 SV=1
MM1 pKa = 7.71SGTTSNTAFGADD13 pKa = 3.96DD14 pKa = 3.78SAIPAAIGGGGSAGPSVGAGDD35 pKa = 3.6ATGPIVSVNTSGIDD49 pKa = 3.66LAGLPAQYY57 pKa = 9.26STASADD63 pKa = 3.57GTGLGFFTRR72 pKa = 11.84QLEE75 pKa = 4.32YY76 pKa = 10.97VPTAVTVGPDD86 pKa = 3.14DD87 pKa = 3.92ALYY90 pKa = 10.89VSGLSGLPYY99 pKa = 9.16PDD101 pKa = 4.12GYY103 pKa = 10.61SRR105 pKa = 11.84VMRR108 pKa = 11.84VADD111 pKa = 3.6THH113 pKa = 5.97ATTGFDD119 pKa = 3.56GQIDD123 pKa = 3.73SGVPQTYY130 pKa = 10.6ASGLSQVNGLSFDD143 pKa = 3.69GKK145 pKa = 11.2GNLNVLEE152 pKa = 4.55FVNAANIYY160 pKa = 10.62DD161 pKa = 4.1PTRR164 pKa = 11.84QPGEE168 pKa = 4.23LPPSEE173 pKa = 5.59LIRR176 pKa = 11.84IAPDD180 pKa = 3.55GVRR183 pKa = 11.84TTISGPEE190 pKa = 3.95LKK192 pKa = 10.43LANYY196 pKa = 9.37VLADD200 pKa = 3.67KK201 pKa = 8.78EE202 pKa = 4.5TGDD205 pKa = 3.69VYY207 pKa = 11.37VAIGNADD214 pKa = 3.36INNGEE219 pKa = 4.29VLRR222 pKa = 11.84YY223 pKa = 9.58HH224 pKa = 7.09VDD226 pKa = 3.45DD227 pKa = 4.09ATGQATSVDD236 pKa = 4.09VVASGLNNPRR246 pKa = 11.84GMAFGPDD253 pKa = 2.51GHH255 pKa = 8.37LYY257 pKa = 10.97VNEE260 pKa = 4.22QGLGTPGDD268 pKa = 4.04SPDD271 pKa = 3.54AATAPTIPFIPGAVDD286 pKa = 3.12EE287 pKa = 5.15RR288 pKa = 11.84GGFTASITRR297 pKa = 11.84VDD299 pKa = 3.24IDD301 pKa = 3.43GSGQEE306 pKa = 4.65RR307 pKa = 11.84IFTGLPSIRR316 pKa = 11.84EE317 pKa = 3.98VNAATGEE324 pKa = 4.0DD325 pKa = 3.52RR326 pKa = 11.84VISVGSNGFTIAPDD340 pKa = 3.47GTAYY344 pKa = 10.86LATGGGLTAATADD357 pKa = 3.76ALGPLAPYY365 pKa = 9.96IQGLLKK371 pKa = 9.9IDD373 pKa = 3.84GLFDD377 pKa = 4.64HH378 pKa = 7.52DD379 pKa = 4.47PSNVTVTPAFNSVTYY394 pKa = 10.23AAEE397 pKa = 4.23NGPDD401 pKa = 3.64GSQTLFNTQSNLNDD415 pKa = 3.33VVVGSDD421 pKa = 2.79GHH423 pKa = 7.93IYY425 pKa = 10.73AVDD428 pKa = 3.25AARR431 pKa = 11.84NVMYY435 pKa = 10.51GFSPDD440 pKa = 4.35DD441 pKa = 3.83LSTPDD446 pKa = 3.72SVTVFQKK453 pKa = 10.17QAPVLTPPQYY463 pKa = 10.86AAVVAAGGNPSLDD476 pKa = 3.65YY477 pKa = 10.56QVEE480 pKa = 4.33IAQTTYY486 pKa = 10.64KK487 pKa = 10.6AEE489 pKa = 4.28NGAPDD494 pKa = 3.7TPGRR498 pKa = 11.84AEE500 pKa = 3.84AAASFSPADD509 pKa = 3.97PGAAAAGAPAGPADD523 pKa = 4.02AGLPAGIVDD532 pKa = 3.72TAVPPRR538 pKa = 11.84GEE540 pKa = 4.19DD541 pKa = 3.27ASVGTVNAAGADD553 pKa = 3.93GLPGSIPVTDD563 pKa = 4.28PSFPGPIDD571 pKa = 4.69PISPPVLPGNVYY583 pKa = 10.09VPYY586 pKa = 10.13FDD588 pKa = 4.79PFFGGNYY595 pKa = 10.01APATPPVLPAGGHH608 pKa = 5.46GATYY612 pKa = 9.22TVSHH616 pKa = 7.13LYY618 pKa = 10.8SFGDD622 pKa = 3.49RR623 pKa = 11.84LVDD626 pKa = 4.28DD627 pKa = 4.7GGSYY631 pKa = 10.14GAAAVAQAAGQPAPNASPVYY651 pKa = 8.49YY652 pKa = 10.25QGGFSDD658 pKa = 4.41GPNWTDD664 pKa = 3.13NLAKK668 pKa = 10.36ILGAQQTDD676 pKa = 3.85GEE678 pKa = 4.9DD679 pKa = 3.35NNFGYY684 pKa = 10.85VLATARR690 pKa = 11.84PIEE693 pKa = 4.4NPLDD697 pKa = 3.99PFTGQTTLNTFEE709 pKa = 4.18GQIDD713 pKa = 4.19AFQQAHH719 pKa = 6.82AYY721 pKa = 9.94FSANDD726 pKa = 3.72LVTVTFGGNDD736 pKa = 3.17LTLPSNLSPEE746 pKa = 4.16EE747 pKa = 4.74GITEE751 pKa = 4.19SVQAIVDD758 pKa = 3.86GLDD761 pKa = 2.97RR762 pKa = 11.84LADD765 pKa = 4.15LGAHH769 pKa = 6.19HH770 pKa = 6.94FVITNLPDD778 pKa = 3.91LEE780 pKa = 4.37LAPLFKK786 pKa = 11.06DD787 pKa = 3.65PDD789 pKa = 3.74FLQQLGAEE797 pKa = 4.48PGSFQPLVAEE807 pKa = 5.05FNARR811 pKa = 11.84LADD814 pKa = 3.61AVHH817 pKa = 6.39AFEE820 pKa = 4.97GEE822 pKa = 4.0RR823 pKa = 11.84GVDD826 pKa = 3.38VTLLDD831 pKa = 3.51VHH833 pKa = 7.21KK834 pKa = 10.57LFDD837 pKa = 6.01AIADD841 pKa = 3.77DD842 pKa = 3.87PAAYY846 pKa = 10.03GFNDD850 pKa = 2.86VDD852 pKa = 4.11QPVLAAPPLQPGTPTVYY869 pKa = 10.41NPAIVGQDD877 pKa = 3.36PAVEE881 pKa = 4.05HH882 pKa = 6.88ASLFIDD888 pKa = 4.14PFFHH892 pKa = 6.61PTALGQAILAEE903 pKa = 4.52TAWHH907 pKa = 6.4VIAA910 pKa = 5.91

Molecular weight: 93.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R5Q7N2|A0A4R5Q7N2_9PROT PaaI family thioesterase OS=Dankookia rubra OX=1442381 GN=E2C06_32165 PE=4 SV=1
MM1 pKa = 7.59PPAPARR7 pKa = 11.84AAGRR11 pKa = 11.84APAAAPRR18 pKa = 11.84GRR20 pKa = 11.84ARR22 pKa = 11.84GGGRR26 pKa = 11.84TAPARR31 pKa = 11.84PSAPPAPAPAWSRR44 pKa = 11.84RR45 pKa = 11.84APRR48 pKa = 11.84PAGPAPPLAPPGPAPGRR65 pKa = 11.84RR66 pKa = 11.84PRR68 pKa = 3.85

Molecular weight: 6.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7087

0

7087

2193505

25

3143

309.5

33.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.024 ± 0.05

0.908 ± 0.01

5.042 ± 0.022

5.335 ± 0.025

3.211 ± 0.016

9.512 ± 0.029

2.047 ± 0.014

3.893 ± 0.018

2.023 ± 0.022

10.911 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.294 ± 0.014

1.984 ± 0.015

6.364 ± 0.025

3.064 ± 0.018

8.445 ± 0.033

4.332 ± 0.019

4.944 ± 0.02

7.31 ± 0.026

1.567 ± 0.013

1.79 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski