Capra hircus papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Phipapillomavirus; Phipapillomavirus 1

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q1I123|Q1I123_9PAPI E4 OS=Capra hircus papillomavirus 1 OX=338903 GN=E4 PE=4 SV=1
MM1 pKa = 7.01VRR3 pKa = 11.84AKK5 pKa = 9.95RR6 pKa = 11.84VKK8 pKa = 10.1RR9 pKa = 11.84ASEE12 pKa = 3.8DD13 pKa = 3.2QLYY16 pKa = 10.14RR17 pKa = 11.84DD18 pKa = 4.04CLAGRR23 pKa = 11.84EE24 pKa = 4.31CKK26 pKa = 9.91PDD28 pKa = 3.22IKK30 pKa = 10.85DD31 pKa = 3.2KK32 pKa = 11.64YY33 pKa = 9.86EE34 pKa = 4.15NNTLADD40 pKa = 5.03SILKK44 pKa = 8.89WASQFLWFGQLGIGTGRR61 pKa = 11.84GSGGSGGYY69 pKa = 7.9TRR71 pKa = 11.84LGGGGGGSRR80 pKa = 11.84TGVISRR86 pKa = 11.84PPVVIDD92 pKa = 3.76SIGPRR97 pKa = 11.84DD98 pKa = 3.79ITPIDD103 pKa = 3.83TVDD106 pKa = 3.55PTASSIVPLNEE117 pKa = 4.34GGPSVPTGEE126 pKa = 4.1IEE128 pKa = 4.75VIAEE132 pKa = 4.26TTPTTSNGALDD143 pKa = 3.87PVIVGEE149 pKa = 4.43PDD151 pKa = 3.4LGPATIDD158 pKa = 3.38VSSDD162 pKa = 3.3PTPSNPVLNTTVSSSIHH179 pKa = 5.99NNPSFDD185 pKa = 3.71AAILSSQLPGEE196 pKa = 4.29FSVPDD201 pKa = 3.43QVVITHH207 pKa = 6.47GLVGEE212 pKa = 4.63HH213 pKa = 6.44IGAFEE218 pKa = 4.59NIEE221 pKa = 4.28LDD223 pKa = 3.8TIGEE227 pKa = 4.01YY228 pKa = 10.59SGFGEE233 pKa = 4.91LEE235 pKa = 4.06VEE237 pKa = 4.44EE238 pKa = 5.3PPSSSTPQTGLSARR252 pKa = 11.84LSKK255 pKa = 10.57NLKK258 pKa = 7.75QLRR261 pKa = 11.84QRR263 pKa = 11.84LYY265 pKa = 10.6NRR267 pKa = 11.84RR268 pKa = 11.84IQQRR272 pKa = 11.84LVEE275 pKa = 4.28NQPFLTSPRR284 pKa = 11.84RR285 pKa = 11.84LVQFEE290 pKa = 4.12YY291 pKa = 10.96SNPSFQDD298 pKa = 3.3EE299 pKa = 4.35VSLEE303 pKa = 3.9FEE305 pKa = 4.01RR306 pKa = 11.84DD307 pKa = 2.96INTVVEE313 pKa = 4.28APHH316 pKa = 6.59YY317 pKa = 10.21DD318 pKa = 3.08FRR320 pKa = 11.84DD321 pKa = 3.8VVRR324 pKa = 11.84LGRR327 pKa = 11.84PEE329 pKa = 4.86SNLTDD334 pKa = 3.6SGHH337 pKa = 5.46VRR339 pKa = 11.84VSRR342 pKa = 11.84LGTLGTISTRR352 pKa = 11.84SGLIIGGQVHH362 pKa = 6.85YY363 pKa = 9.64YY364 pKa = 9.88TDD366 pKa = 4.07LSSIAADD373 pKa = 3.93TIEE376 pKa = 4.45LPSYY380 pKa = 9.52QPAMSPSTIVHH391 pKa = 6.54IDD393 pKa = 3.27SAGEE397 pKa = 4.01TFNDD401 pKa = 4.02MEE403 pKa = 4.55TSFCNVDD410 pKa = 3.16QGIEE414 pKa = 4.07EE415 pKa = 4.31VEE417 pKa = 3.92RR418 pKa = 11.84DD419 pKa = 3.84LLDD422 pKa = 3.76SASEE426 pKa = 4.09DD427 pKa = 3.75FSNSRR432 pKa = 11.84LLLSTGSDD440 pKa = 3.11IVDD443 pKa = 3.75SGLDD447 pKa = 3.42LQDD450 pKa = 2.75IFQRR454 pKa = 11.84PNLGEE459 pKa = 4.2DD460 pKa = 3.62SITVNFPTSNSIQVFNGSGAGSSIPATPIGPLGPVPIPAVLFNVLSSDD508 pKa = 4.16LLLDD512 pKa = 3.9PSLLRR517 pKa = 11.84KK518 pKa = 9.25RR519 pKa = 11.84RR520 pKa = 11.84KK521 pKa = 9.72KK522 pKa = 10.88YY523 pKa = 10.75GVFSS527 pKa = 3.89

Molecular weight: 56.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q1I125|Q1I125_9PAPI Replication protein E1 OS=Capra hircus papillomavirus 1 OX=338903 GN=E1 PE=3 SV=1
MM1 pKa = 6.99TALEE5 pKa = 3.99ARR7 pKa = 11.84FEE9 pKa = 4.16EE10 pKa = 4.62VQEE13 pKa = 4.16KK14 pKa = 10.5LLEE17 pKa = 4.22LLEE20 pKa = 4.8RR21 pKa = 11.84NPEE24 pKa = 4.06TLDD27 pKa = 3.32EE28 pKa = 4.3QIEE31 pKa = 4.24YY32 pKa = 9.94WEE34 pKa = 4.07LVKK37 pKa = 10.44WEE39 pKa = 4.3NIYY42 pKa = 11.22YY43 pKa = 10.05NAARR47 pKa = 11.84RR48 pKa = 11.84KK49 pKa = 9.57GIHH52 pKa = 6.58KK53 pKa = 10.34LGFSPVPSLQASEE66 pKa = 5.04HH67 pKa = 5.68GAKK70 pKa = 9.78EE71 pKa = 4.05AIGMKK76 pKa = 10.26LQLTNLKK83 pKa = 10.47SSGFGSEE90 pKa = 3.62KK91 pKa = 8.64WTLADD96 pKa = 3.8TSSMTYY102 pKa = 10.38LAPPKK107 pKa = 9.59HH108 pKa = 5.23TFKK111 pKa = 11.12KK112 pKa = 9.76LSKK115 pKa = 9.27PVTVTFDD122 pKa = 3.87SNSQNAVRR130 pKa = 11.84YY131 pKa = 6.2TCWSHH136 pKa = 7.28VYY138 pKa = 10.13YY139 pKa = 11.17LNDD142 pKa = 2.84NDD144 pKa = 4.79MYY146 pKa = 10.95VKK148 pKa = 10.32SYY150 pKa = 11.49SNVDD154 pKa = 3.11VHH156 pKa = 5.9GVYY159 pKa = 10.74YY160 pKa = 10.3IRR162 pKa = 11.84DD163 pKa = 3.5SRR165 pKa = 11.84KK166 pKa = 8.14QYY168 pKa = 10.47YY169 pKa = 10.79VNFEE173 pKa = 3.65KK174 pKa = 10.76DD175 pKa = 2.96ARR177 pKa = 11.84KK178 pKa = 10.03YY179 pKa = 11.04SSTGQWDD186 pKa = 3.46VSFEE190 pKa = 4.12NKK192 pKa = 9.75HH193 pKa = 5.81LSSSIASSSGHH204 pKa = 5.46TATVATPEE212 pKa = 4.25TTVTSTQASAAAASAADD229 pKa = 4.03SQEE232 pKa = 4.01EE233 pKa = 4.89TPGSTRR239 pKa = 11.84KK240 pKa = 10.01LLTATYY246 pKa = 10.43HH247 pKa = 6.77RR248 pKa = 11.84ILRR251 pKa = 11.84DD252 pKa = 3.23RR253 pKa = 11.84GSPRR257 pKa = 11.84PASRR261 pKa = 11.84SRR263 pKa = 11.84SRR265 pKa = 11.84SSTSTSSSGSSYY277 pKa = 10.66RR278 pKa = 11.84PGSRR282 pKa = 11.84RR283 pKa = 11.84SSSGRR288 pKa = 11.84GARR291 pKa = 11.84RR292 pKa = 11.84SRR294 pKa = 11.84GRR296 pKa = 11.84SWRR299 pKa = 11.84RR300 pKa = 11.84TRR302 pKa = 11.84SRR304 pKa = 11.84SQSTEE309 pKa = 3.25RR310 pKa = 11.84SRR312 pKa = 11.84GGGGGRR318 pKa = 11.84GRR320 pKa = 11.84GRR322 pKa = 11.84PRR324 pKa = 11.84RR325 pKa = 11.84SGLHH329 pKa = 5.38SRR331 pKa = 11.84PSRR334 pKa = 11.84SPAPKK339 pKa = 10.08GSGVPKK345 pKa = 10.04RR346 pKa = 11.84RR347 pKa = 11.84PSVRR351 pKa = 11.84APQSYY356 pKa = 10.24RR357 pKa = 11.84GGSQQGTPPRR367 pKa = 11.84PTAVSVASATPDD379 pKa = 3.14IPRR382 pKa = 11.84LSPWFRR388 pKa = 11.84RR389 pKa = 11.84RR390 pKa = 11.84SHH392 pKa = 5.32STPRR396 pKa = 11.84SPVRR400 pKa = 11.84APGRR404 pKa = 11.84GSPPASLGSVRR415 pKa = 11.84HH416 pKa = 5.66HH417 pKa = 6.54QSSQRR422 pKa = 11.84KK423 pKa = 8.09RR424 pKa = 11.84SRR426 pKa = 11.84SHH428 pKa = 6.09EE429 pKa = 4.07RR430 pKa = 11.84LHH432 pKa = 6.79SAVKK436 pKa = 9.95KK437 pKa = 10.04DD438 pKa = 3.4PYY440 pKa = 10.57VILVRR445 pKa = 11.84GKK447 pKa = 9.58PNQLKK452 pKa = 8.33CWRR455 pKa = 11.84WRR457 pKa = 11.84LHH459 pKa = 4.34NRR461 pKa = 11.84ARR463 pKa = 11.84RR464 pKa = 11.84VPFRR468 pKa = 11.84CFSTTFSWVSLVQGEE483 pKa = 4.15KK484 pKa = 10.53SIANRR489 pKa = 11.84MLVVFDD495 pKa = 3.63TRR497 pKa = 11.84QDD499 pKa = 3.33RR500 pKa = 11.84EE501 pKa = 4.36LFLHH505 pKa = 6.8RR506 pKa = 11.84VTFPPGVTWCYY517 pKa = 11.14GSLDD521 pKa = 4.28CII523 pKa = 4.39

Molecular weight: 58.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2611

92

566

373.0

41.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.4 ± 0.662

2.106 ± 0.6

6.09 ± 0.912

5.668 ± 0.349

4.098 ± 0.562

6.817 ± 0.917

2.375 ± 0.327

4.251 ± 0.76

4.787 ± 0.793

8.771 ± 0.727

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.379 ± 0.252

3.983 ± 0.77

7.085 ± 1.56

4.787 ± 0.658

7.124 ± 1.416

9.307 ± 1.489

5.553 ± 0.514

5.898 ± 0.57

1.34 ± 0.3

3.179 ± 0.414
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski