Elderberry carlavirus C

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus; Sambucus virus C

Average proteome isoelectric point is 7.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0A7MB61|A0A0A7MB61_9VIRU Helicase OS=Elderberry carlavirus C OX=1569054 PE=3 SV=1
MM1 pKa = 7.61EE2 pKa = 5.1IVLEE6 pKa = 4.18EE7 pKa = 4.17ADD9 pKa = 3.46LAGFEE14 pKa = 4.19RR15 pKa = 11.84TNLKK19 pKa = 10.17LSKK22 pKa = 9.93PLVFHH27 pKa = 6.58CVPGAGKK34 pKa = 8.5STFIRR39 pKa = 11.84HH40 pKa = 5.82LLGLSSRR47 pKa = 11.84FEE49 pKa = 4.32AFTHH53 pKa = 6.64GAADD57 pKa = 3.69PRR59 pKa = 11.84KK60 pKa = 9.85LDD62 pKa = 3.32GRR64 pKa = 11.84RR65 pKa = 11.84IKK67 pKa = 10.38PVSEE71 pKa = 5.01LEE73 pKa = 4.23AADD76 pKa = 3.77QNSLVLIDD84 pKa = 4.79EE85 pKa = 4.55YY86 pKa = 11.56CSGEE90 pKa = 4.28EE91 pKa = 3.87VSEE94 pKa = 3.96RR95 pKa = 11.84ALAVFGDD102 pKa = 4.26PLQSNTGPVLQPHH115 pKa = 5.98FVLNKK120 pKa = 9.11SRR122 pKa = 11.84RR123 pKa = 11.84FGAQTAALLKK133 pKa = 9.37TLGYY137 pKa = 10.44DD138 pKa = 3.59VEE140 pKa = 5.73AEE142 pKa = 3.86GDD144 pKa = 4.1DD145 pKa = 3.62NVKK148 pKa = 10.32ISDD151 pKa = 3.51IFKK154 pKa = 10.59AEE156 pKa = 3.97PEE158 pKa = 4.34GKK160 pKa = 9.58VICYY164 pKa = 8.61EE165 pKa = 4.13RR166 pKa = 11.84EE167 pKa = 3.89VAQLLRR173 pKa = 11.84RR174 pKa = 11.84HH175 pKa = 5.61GVDD178 pKa = 3.34YY179 pKa = 11.39LCANSVRR186 pKa = 11.84GSTFDD191 pKa = 3.31EE192 pKa = 4.96VCFVTAEE199 pKa = 4.25SEE201 pKa = 4.15PSDD204 pKa = 3.3RR205 pKa = 11.84ALAFVCLTRR214 pKa = 11.84HH215 pKa = 5.76RR216 pKa = 11.84KK217 pKa = 8.81KK218 pKa = 10.98LQILCPNATYY228 pKa = 10.9APAA231 pKa = 5.32

Molecular weight: 25.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A7MDT6|A0A0A7MDT6_9VIRU Capsid protein OS=Elderberry carlavirus C OX=1569054 PE=3 SV=1
MM1 pKa = 7.54GSDD4 pKa = 3.85RR5 pKa = 11.84LSTMYY10 pKa = 10.88LVLWKK15 pKa = 10.08LKK17 pKa = 10.36NVGSIDD23 pKa = 3.96LCVLILSLSKK33 pKa = 10.78PPLTLGGGSSSYY45 pKa = 10.66AKK47 pKa = 9.99KK48 pKa = 10.27RR49 pKa = 11.84RR50 pKa = 11.84AAKK53 pKa = 9.98IGRR56 pKa = 11.84CWRR59 pKa = 11.84CFRR62 pKa = 11.84VVPPPYY68 pKa = 9.71HH69 pKa = 6.4SKK71 pKa = 10.95CDD73 pKa = 3.46GRR75 pKa = 11.84TCRR78 pKa = 11.84PGISYY83 pKa = 9.84RR84 pKa = 11.84WEE86 pKa = 3.33IALYY90 pKa = 9.35ISRR93 pKa = 11.84GVTEE97 pKa = 5.16VIPLEE102 pKa = 4.18NN103 pKa = 3.53

Molecular weight: 11.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2818

66

2005

469.7

52.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.588 ± 0.714

2.697 ± 0.622

4.507 ± 0.556

7.062 ± 1.285

4.01 ± 0.83

6.352 ± 0.383

3.016 ± 0.305

5.287 ± 0.698

5.855 ± 0.805

10.256 ± 0.648

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.916 ± 0.369

3.655 ± 0.338

4.684 ± 0.822

2.484 ± 0.333

5.997 ± 0.502

6.813 ± 0.456

5.678 ± 0.61

6.565 ± 0.73

0.923 ± 0.258

3.655 ± 0.333
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski