Odoribacter sp. CAG:788

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Odoribacteraceae; Odoribacter; environmental samples

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3078 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R5NQY6|R5NQY6_9BACT Uncharacterized protein OS=Odoribacter sp. CAG:788 OX=1262909 GN=BN783_02240 PE=4 SV=1
MM1 pKa = 7.85NYY3 pKa = 9.72RR4 pKa = 11.84FEE6 pKa = 4.82ISLPNSSDD14 pKa = 3.47FRR16 pKa = 11.84CEE18 pKa = 3.06IAMGGKK24 pKa = 7.74QTFQQFHH31 pKa = 6.86DD32 pKa = 4.76KK33 pKa = 10.34IIEE36 pKa = 3.92VLGYY40 pKa = 10.32DD41 pKa = 4.55GSQMASFYY49 pKa = 10.88TLDD52 pKa = 3.26RR53 pKa = 11.84MGNRR57 pKa = 11.84VKK59 pKa = 10.61EE60 pKa = 3.98IALMDD65 pKa = 3.75MSTEE69 pKa = 4.04DD70 pKa = 4.13EE71 pKa = 4.34EE72 pKa = 4.74TDD74 pKa = 3.71TLVMDD79 pKa = 3.54VTEE82 pKa = 4.0IQEE85 pKa = 4.13IVNANCIEE93 pKa = 4.08LEE95 pKa = 4.23YY96 pKa = 11.39VFDD99 pKa = 4.57FFNNRR104 pKa = 11.84YY105 pKa = 9.06FRR107 pKa = 11.84VEE109 pKa = 3.71YY110 pKa = 10.26AGEE113 pKa = 4.17YY114 pKa = 9.76IADD117 pKa = 3.92SADD120 pKa = 3.38VLPVCIYY127 pKa = 10.74CDD129 pKa = 3.57GDD131 pKa = 3.29IPEE134 pKa = 4.09QMEE137 pKa = 4.25FEE139 pKa = 4.63GDD141 pKa = 3.88EE142 pKa = 3.86KK143 pKa = 10.85WGFDD147 pKa = 3.79KK148 pKa = 11.25PEE150 pKa = 3.92EE151 pKa = 4.37EE152 pKa = 4.4YY153 pKa = 11.15DD154 pKa = 3.56DD155 pKa = 4.93SFMEE159 pKa = 4.29EE160 pKa = 4.41FSNDD164 pKa = 2.87SDD166 pKa = 4.7DD167 pKa = 5.41YY168 pKa = 11.51RR169 pKa = 11.84DD170 pKa = 3.65EE171 pKa = 5.61DD172 pKa = 4.97DD173 pKa = 4.4EE174 pKa = 5.08FGRR177 pKa = 11.84DD178 pKa = 3.36DD179 pKa = 6.42DD180 pKa = 4.08EE181 pKa = 6.54FEE183 pKa = 5.23DD184 pKa = 3.68EE185 pKa = 4.15GRR187 pKa = 11.84YY188 pKa = 9.81DD189 pKa = 4.83DD190 pKa = 4.83RR191 pKa = 11.84YY192 pKa = 11.09EE193 pKa = 5.39SIDD196 pKa = 4.25DD197 pKa = 4.62YY198 pKa = 11.46IDD200 pKa = 3.29KK201 pKa = 11.0LL202 pKa = 3.81

Molecular weight: 23.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R5P2T2|R5P2T2_9BACT Glucosamine-6-phosphate deaminase OS=Odoribacter sp. CAG:788 OX=1262909 GN=nagB PE=3 SV=1
MM1 pKa = 7.85ACQCLRR7 pKa = 11.84KK8 pKa = 9.71IKK10 pKa = 10.49GKK12 pKa = 8.92WLSFCKK18 pKa = 10.38YY19 pKa = 8.3NKK21 pKa = 8.86QRR23 pKa = 11.84IMRR26 pKa = 11.84SPRR29 pKa = 11.84YY30 pKa = 9.89LLTQRR35 pKa = 11.84VRR37 pKa = 11.84LFLEE41 pKa = 3.78QGRR44 pKa = 11.84DD45 pKa = 3.12LNMPVGEE52 pKa = 4.42AEE54 pKa = 4.66RR55 pKa = 11.84IRR57 pKa = 11.84KK58 pKa = 7.83FLRR61 pKa = 11.84WNLVGVFNDD70 pKa = 4.02PFVHH74 pKa = 6.95LYY76 pKa = 10.11NFRR79 pKa = 11.84GYY81 pKa = 10.96NVLRR85 pKa = 11.84DD86 pKa = 3.71RR87 pKa = 11.84KK88 pKa = 9.43RR89 pKa = 11.84ICGLYY94 pKa = 9.84IPRR97 pKa = 11.84KK98 pKa = 8.63EE99 pKa = 3.97RR100 pKa = 11.84NCISKK105 pKa = 10.9EE106 pKa = 3.91EE107 pKa = 3.96

Molecular weight: 13.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3078

0

3078

1124252

29

6292

365.3

41.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.966 ± 0.046

1.239 ± 0.019

5.345 ± 0.032

6.543 ± 0.047

4.713 ± 0.034

7.061 ± 0.045

1.741 ± 0.02

7.274 ± 0.045

6.547 ± 0.044

9.344 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.548 ± 0.022

5.009 ± 0.041

3.777 ± 0.025

3.329 ± 0.023

4.791 ± 0.034

5.802 ± 0.036

5.542 ± 0.051

6.67 ± 0.049

1.248 ± 0.017

4.511 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski