Tursiops truncatus papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Upsilonpapillomavirus; Upsilonpapillomavirus 1

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B4XYE1|B4XYE1_9PAPI Replication protein E1 OS=Tursiops truncatus papillomavirus 1 OX=936059 GN=E1 PE=3 SV=1
MM1 pKa = 7.72ANTNPCTIIEE11 pKa = 4.2LCEE14 pKa = 3.97QFDD17 pKa = 4.33LDD19 pKa = 4.41LYY21 pKa = 11.12EE22 pKa = 6.14LFICCVFCRR31 pKa = 11.84KK32 pKa = 9.46VLEE35 pKa = 5.49DD36 pKa = 3.37IEE38 pKa = 4.55KK39 pKa = 8.32WSCRR43 pKa = 11.84NRR45 pKa = 11.84EE46 pKa = 3.91INVVWKK52 pKa = 10.59KK53 pKa = 9.2EE54 pKa = 3.74YY55 pKa = 9.95PYY57 pKa = 11.04AVCCKK62 pKa = 9.45CLEE65 pKa = 4.17VQAILDD71 pKa = 3.61LLRR74 pKa = 11.84YY75 pKa = 9.03FEE77 pKa = 4.87RR78 pKa = 11.84SGSAKK83 pKa = 9.43TVEE86 pKa = 4.3EE87 pKa = 4.33DD88 pKa = 2.94TGKK91 pKa = 9.79PLGDD95 pKa = 3.49LRR97 pKa = 11.84VRR99 pKa = 11.84CYY101 pKa = 11.13GCYY104 pKa = 9.93KK105 pKa = 10.44PLTATEE111 pKa = 4.32KK112 pKa = 10.49LFHH115 pKa = 8.0VEE117 pKa = 3.85DD118 pKa = 3.51QRR120 pKa = 11.84PFTKK124 pKa = 10.23VCNQWRR130 pKa = 11.84GICTNCQYY138 pKa = 11.11LPPRR142 pKa = 11.84LLYY145 pKa = 10.88YY146 pKa = 10.38FFTIAGRR153 pKa = 11.84TVRR156 pKa = 11.84SPLPGLTWGFDD167 pKa = 3.64PPPANLSEE175 pKa = 4.61SEE177 pKa = 4.26SSSWTTTTTSSDD189 pKa = 3.25TSSQTSSSVTSGRR202 pKa = 11.84RR203 pKa = 11.84DD204 pKa = 3.58DD205 pKa = 4.3NLSDD209 pKa = 4.15AEE211 pKa = 4.41SNEE214 pKa = 3.82NDD216 pKa = 3.74DD217 pKa = 4.49EE218 pKa = 4.61NPEE221 pKa = 4.0VLII224 pKa = 5.03

Molecular weight: 25.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B4XYE5|B4XYE5_9PAPI Minor capsid protein L2 OS=Tursiops truncatus papillomavirus 1 OX=936059 GN=L2 PE=3 SV=1
LL1 pKa = 6.99LVCILFVLFPLCIFVIKK18 pKa = 10.51SCMHH22 pKa = 6.73PASLLYY28 pKa = 9.98IYY30 pKa = 10.31II31 pKa = 4.39

Molecular weight: 3.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2481

31

639

354.4

39.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.804 ± 0.515

2.66 ± 0.718

5.804 ± 0.763

5.844 ± 0.649

3.708 ± 0.334

6.651 ± 0.585

2.499 ± 0.675

4.635 ± 0.47

5.038 ± 0.854

8.787 ± 0.655

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.894 ± 0.462

3.99 ± 0.553

7.134 ± 0.931

3.869 ± 0.78

5.361 ± 0.609

8.303 ± 0.91

6.933 ± 0.782

6.489 ± 0.357

1.693 ± 0.248

2.902 ± 0.162
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski