Camellia sinensis var. sinensis

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 30052 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4S4DFN4|A0A4S4DFN4_CAMSI Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_020291 PE=4 SV=1
MM1 pKa = 7.75AAFLYY6 pKa = 10.48FDD8 pKa = 6.13LIINYY13 pKa = 8.65KK14 pKa = 10.54DD15 pKa = 3.25KK16 pKa = 11.09VGRR19 pKa = 11.84IYY21 pKa = 11.03DD22 pKa = 3.67VDD24 pKa = 3.99PNMYY28 pKa = 10.19CYY30 pKa = 10.13IDD32 pKa = 3.77ALKK35 pKa = 10.82DD36 pKa = 3.35VTEE39 pKa = 4.53TVLSHH44 pKa = 6.75IDD46 pKa = 3.45CSEE49 pKa = 4.48AIAITLHH56 pKa = 7.01YY57 pKa = 10.7DD58 pKa = 3.23MPGTEE63 pKa = 4.08NKK65 pKa = 10.18RR66 pKa = 11.84LIEE69 pKa = 4.28NDD71 pKa = 3.69LDD73 pKa = 3.96VLDD76 pKa = 4.32MFYY79 pKa = 10.82VQCRR83 pKa = 11.84SKK85 pKa = 9.93TINLYY90 pKa = 10.71VDD92 pKa = 3.46IAYY95 pKa = 10.48CIGKK99 pKa = 9.76EE100 pKa = 3.99DD101 pKa = 3.84GEE103 pKa = 4.48GRR105 pKa = 11.84NDD107 pKa = 3.29VGDD110 pKa = 3.85NNGGDD115 pKa = 4.0GNGGVHH121 pKa = 6.41GVHH124 pKa = 6.56TIEE127 pKa = 3.77VDD129 pKa = 3.08EE130 pKa = 5.23EE131 pKa = 4.06YY132 pKa = 10.89RR133 pKa = 11.84EE134 pKa = 4.15DD135 pKa = 3.59NVYY138 pKa = 10.82GFSDD142 pKa = 4.81EE143 pKa = 4.75DD144 pKa = 4.2RR145 pKa = 11.84DD146 pKa = 3.71WNASVDD152 pKa = 4.01GQHH155 pKa = 6.27EE156 pKa = 4.58LNGTVSLSDD165 pKa = 3.56EE166 pKa = 4.68DD167 pKa = 4.73NEE169 pKa = 5.16EE170 pKa = 4.23SNEE173 pKa = 3.89DD174 pKa = 4.29DD175 pKa = 4.68GLSDD179 pKa = 3.79YY180 pKa = 11.25QSGDD184 pKa = 3.26DD185 pKa = 3.55EE186 pKa = 4.6VRR188 pKa = 11.84YY189 pKa = 10.41SSSDD193 pKa = 3.42DD194 pKa = 3.45EE195 pKa = 4.61FAGG198 pKa = 4.09

Molecular weight: 22.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4S4D3Q4|A0A4S4D3Q4_CAMSI Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_009666 PE=4 SV=1
MM1 pKa = 7.23SAVAKK6 pKa = 10.36ASKK9 pKa = 10.48NVFATGYY16 pKa = 7.64YY17 pKa = 8.85AHH19 pKa = 7.34RR20 pKa = 11.84RR21 pKa = 11.84STAPPFVLAAAPPQHH36 pKa = 6.15RR37 pKa = 11.84TTVRR41 pKa = 11.84PRR43 pKa = 11.84RR44 pKa = 11.84STAAAPHH51 pKa = 6.33HH52 pKa = 6.66RR53 pKa = 11.84SSSPQHH59 pKa = 6.22RR60 pKa = 11.84RR61 pKa = 11.84STAPPFVLAAAPPQHH76 pKa = 6.15RR77 pKa = 11.84TTVRR81 pKa = 11.84PRR83 pKa = 11.84RR84 pKa = 11.84STAAAPHH91 pKa = 6.33HH92 pKa = 6.66RR93 pKa = 11.84SSSPQHH99 pKa = 6.22RR100 pKa = 11.84RR101 pKa = 11.84STAPPFVLAAAPPQHH116 pKa = 6.15RR117 pKa = 11.84TTVRR121 pKa = 11.84PRR123 pKa = 11.84RR124 pKa = 11.84STAAAPHH131 pKa = 6.33HH132 pKa = 6.66RR133 pKa = 11.84SSSPQHH139 pKa = 6.22RR140 pKa = 11.84RR141 pKa = 11.84STAPPFVLAAAPPQHH156 pKa = 6.15RR157 pKa = 11.84TTVRR161 pKa = 11.84PRR163 pKa = 11.84RR164 pKa = 11.84STAAAPHH171 pKa = 6.33HH172 pKa = 6.66RR173 pKa = 11.84SSSPQHH179 pKa = 6.22RR180 pKa = 11.84RR181 pKa = 11.84STAPPFVLAAAPPQHH196 pKa = 6.15RR197 pKa = 11.84TTVRR201 pKa = 11.84PRR203 pKa = 11.84RR204 pKa = 11.84STAAAPHH211 pKa = 6.33HH212 pKa = 6.66RR213 pKa = 11.84SSSPQHH219 pKa = 6.22RR220 pKa = 11.84RR221 pKa = 11.84STAPPFVLAAAPPQHH236 pKa = 6.15RR237 pKa = 11.84TTVRR241 pKa = 11.84PRR243 pKa = 11.84RR244 pKa = 11.84STAAAPHH251 pKa = 6.33HH252 pKa = 6.66RR253 pKa = 11.84SSSPQHH259 pKa = 6.22RR260 pKa = 11.84RR261 pKa = 11.84STAPPFVLAAAPPQHH276 pKa = 6.15RR277 pKa = 11.84TTVRR281 pKa = 11.84PRR283 pKa = 11.84RR284 pKa = 11.84STAAAPHH291 pKa = 6.33HH292 pKa = 6.66RR293 pKa = 11.84SSSPQHH299 pKa = 6.22RR300 pKa = 11.84RR301 pKa = 11.84STAPPFVLAAAPPQYY316 pKa = 9.25RR317 pKa = 11.84TTVRR321 pKa = 11.84PRR323 pKa = 11.84RR324 pKa = 11.84STAAAPHH331 pKa = 6.07HH332 pKa = 6.49RR333 pKa = 11.84SPFGFAGIWGKK344 pKa = 10.67EE345 pKa = 3.54IGFTDD350 pKa = 3.79LGIWII355 pKa = 4.82

Molecular weight: 38.8 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

30052

0

30052

13452360

40

5832

447.6

49.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.438 ± 0.012

1.951 ± 0.007

5.186 ± 0.01

6.349 ± 0.015

4.299 ± 0.009

6.666 ± 0.025

2.439 ± 0.007

5.439 ± 0.01

5.872 ± 0.014

10.019 ± 0.017

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.483 ± 0.006

4.589 ± 0.011

4.894 ± 0.014

3.636 ± 0.009

5.145 ± 0.01

8.98 ± 0.018

4.95 ± 0.009

6.61 ± 0.01

1.314 ± 0.005

2.742 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski