Triticum urartu (Red wild einkorn) (Crithodium urartu)

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 33312 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M8AIS2|M8AIS2_TRIUA Cucumisin OS=Triticum urartu OX=4572 GN=TRIUR3_23719 PE=3 SV=1
MM1 pKa = 7.76APTNSPPIHH10 pKa = 6.27SAQGGAVHH18 pKa = 6.85GVGNDD23 pKa = 3.34IVSHH27 pKa = 6.52ASASLCTAADD37 pKa = 3.7EE38 pKa = 4.88ASVFGQGPVDD48 pKa = 3.4RR49 pKa = 11.84AVIEE53 pKa = 4.16MVEE56 pKa = 4.14VAEE59 pKa = 4.28NAVVLPQIHH68 pKa = 6.09NAVEE72 pKa = 4.11EE73 pKa = 4.23TGEE76 pKa = 4.62FDD78 pKa = 4.04PLDD81 pKa = 3.9YY82 pKa = 10.9NAPAGANEE90 pKa = 4.5LADD93 pKa = 4.18GDD95 pKa = 4.32NEE97 pKa = 4.79SGTGNVDD104 pKa = 3.29RR105 pKa = 11.84AAADD109 pKa = 4.15DD110 pKa = 5.28DD111 pKa = 4.56VDD113 pKa = 4.41SPPSKK118 pKa = 10.84PEE120 pKa = 3.64DD121 pKa = 3.29LVYY124 pKa = 10.72LFHH127 pKa = 7.15GSYY130 pKa = 10.87GVACVV135 pKa = 3.32

Molecular weight: 13.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T1LP83|T1LP83_TRIUA Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1
TT1 pKa = 7.5AFTPRR6 pKa = 11.84ATLVSLVVTRR16 pKa = 11.84TRR18 pKa = 11.84LPRR21 pKa = 11.84ATSLRR26 pKa = 11.84GVSSTSPHH34 pKa = 6.55ASWLHH39 pKa = 5.06TSSITRR45 pKa = 11.84NIFFPVKK52 pKa = 9.36ASLRR56 pKa = 11.84IGQSTANTFSLRR68 pKa = 11.84CFPPARR74 pKa = 11.84VMAVLRR80 pKa = 11.84SSTLSKK86 pKa = 10.64SWLTLNHH93 pKa = 6.36IFLSKK98 pKa = 10.18LAFMASSLKK107 pKa = 9.28TSRR110 pKa = 11.84ARR112 pKa = 11.84VVLPIPPTPTMAKK125 pKa = 9.63TMTLLLSALLVSASGLLTMISTSALVSSSIFSPP158 pKa = 3.74

Molecular weight: 16.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

33312

0

33312

12117229

29

5024

363.7

40.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.321 ± 0.015

2.016 ± 0.007

5.482 ± 0.012

6.11 ± 0.014

3.789 ± 0.008

7.218 ± 0.013

2.562 ± 0.006

4.658 ± 0.01

5.183 ± 0.014

9.791 ± 0.018

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.563 ± 0.005

3.631 ± 0.009

5.209 ± 0.015

3.547 ± 0.011

5.996 ± 0.012

8.053 ± 0.014

4.932 ± 0.009

6.908 ± 0.009

1.355 ± 0.005

2.673 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski