Beihai razor shell virus 3

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 5.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A1L3KE88|A0A1L3KE88_9VIRU RNA-directed RNA polymerase OS=Beihai razor shell virus 3 OX=1922647 PE=4 SV=1
MM1 pKa = 7.7PEE3 pKa = 3.47GWQRR7 pKa = 11.84PPKK10 pKa = 10.35GKK12 pKa = 9.77YY13 pKa = 9.91ARR15 pKa = 11.84DD16 pKa = 3.38AMLGSLEE23 pKa = 3.84WHH25 pKa = 6.77LEE27 pKa = 3.71QNQRR31 pKa = 11.84ARR33 pKa = 11.84SQCQSVPTSALSDD46 pKa = 2.94IGGRR50 pKa = 11.84VAATYY55 pKa = 9.96CKK57 pKa = 9.71QQEE60 pKa = 4.4LCRR63 pKa = 11.84NLCQQGCWLQSASGEE78 pKa = 4.17PIAVRR83 pKa = 11.84KK84 pKa = 9.71GSRR87 pKa = 11.84GSQRR91 pKa = 11.84DD92 pKa = 3.76GAQHH96 pKa = 5.52QPVGQSFFSSEE107 pKa = 4.26AEE109 pKa = 4.15DD110 pKa = 4.34GCDD113 pKa = 3.21EE114 pKa = 5.15GVLQFLGFTGSGQRR128 pKa = 11.84IGPDD132 pKa = 3.0QRR134 pKa = 11.84FAEE137 pKa = 4.27INGAIACEE145 pKa = 4.24IEE147 pKa = 4.03HH148 pKa = 6.84HH149 pKa = 6.19EE150 pKa = 4.26CCKK153 pKa = 10.53TEE155 pKa = 3.92TEE157 pKa = 4.4EE158 pKa = 5.62RR159 pKa = 11.84EE160 pKa = 4.2CCQQVEE166 pKa = 4.31AGRR169 pKa = 11.84ALDD172 pKa = 3.69TEE174 pKa = 4.49RR175 pKa = 11.84VTRR178 pKa = 11.84LDD180 pKa = 3.99DD181 pKa = 3.5YY182 pKa = 11.85SLGFRR187 pKa = 11.84SLVSDD192 pKa = 4.2VARR195 pKa = 11.84SWGASGVDD203 pKa = 3.66DD204 pKa = 5.22AGVAATIDD212 pKa = 4.45EE213 pKa = 4.37IVATYY218 pKa = 9.57PCLRR222 pKa = 11.84DD223 pKa = 3.07AAVFGRR229 pKa = 11.84FLGSRR234 pKa = 11.84FGNEE238 pKa = 3.12RR239 pKa = 11.84VLNPLSTPGVEE250 pKa = 3.64WRR252 pKa = 11.84LFGADD257 pKa = 3.14NQTVFGYY264 pKa = 10.61DD265 pKa = 3.02AFFGEE270 pKa = 4.7YY271 pKa = 10.22NGVHH275 pKa = 6.1VEE277 pKa = 4.12DD278 pKa = 4.69LRR280 pKa = 11.84CAVIEE285 pKa = 4.5KK286 pKa = 10.05ILRR289 pKa = 11.84LIDD292 pKa = 4.18GPHH295 pKa = 7.37LDD297 pKa = 4.97RR298 pKa = 11.84IHH300 pKa = 6.76TFLKK304 pKa = 10.68DD305 pKa = 3.55EE306 pKa = 3.93PHH308 pKa = 6.49KK309 pKa = 10.25PEE311 pKa = 4.12KK312 pKa = 9.79VAEE315 pKa = 4.24GRR317 pKa = 11.84WRR319 pKa = 11.84IISGVSATDD328 pKa = 3.23QIACHH333 pKa = 6.33LLMGEE338 pKa = 4.3VLSSFSATPLTSGTAIGWNVMMHH361 pKa = 6.67GGLSSIFSLLPFGEE375 pKa = 4.25TGKK378 pKa = 10.71LVSADD383 pKa = 3.48RR384 pKa = 11.84KK385 pKa = 8.77SWDD388 pKa = 3.0WTVQKK393 pKa = 10.64LAVVLFTAFALLLLDD408 pKa = 5.8YY409 pKa = 8.66KK410 pKa = 8.18TQWEE414 pKa = 4.1RR415 pKa = 11.84KK416 pKa = 9.23AIVNHH421 pKa = 6.04ICSIFAIRR429 pKa = 11.84RR430 pKa = 11.84FDD432 pKa = 3.39CQGRR436 pKa = 11.84VVRR439 pKa = 11.84FDD441 pKa = 3.3NFGVLLSGWKK451 pKa = 8.28FTALFNSVVQHH462 pKa = 6.78LYY464 pKa = 11.29HH465 pKa = 6.39MLACSMLSLNGRR477 pKa = 11.84LPLSMGDD484 pKa = 3.39DD485 pKa = 3.77TVQEE489 pKa = 4.52EE490 pKa = 4.76MPQSYY495 pKa = 8.9WDD497 pKa = 3.51HH498 pKa = 6.62LATFGVILKK507 pKa = 8.62PTEE510 pKa = 4.01TFDD513 pKa = 4.67EE514 pKa = 4.83GFEE517 pKa = 4.11FCGAHH522 pKa = 5.92FKK524 pKa = 11.09VNSFSPVYY532 pKa = 10.13LPKK535 pKa = 10.16HH536 pKa = 6.09AYY538 pKa = 8.96NLRR541 pKa = 11.84DD542 pKa = 3.58VSPEE546 pKa = 3.81NLPALLISYY555 pKa = 9.39RR556 pKa = 11.84YY557 pKa = 10.42LYY559 pKa = 10.34MFDD562 pKa = 3.18EE563 pKa = 4.67RR564 pKa = 11.84RR565 pKa = 11.84FNALNRR571 pKa = 11.84WACEE575 pKa = 3.79MGFDD579 pKa = 4.27SLDD582 pKa = 3.43RR583 pKa = 11.84SEE585 pKa = 6.3LIFKK589 pKa = 10.28VLGVSEE595 pKa = 4.32MSEE598 pKa = 4.17VMVV601 pKa = 4.28

Molecular weight:
67.24 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A1L3KE88|A0A1L3KE88_9VIRU RNA-directed RNA polymerase OS=Beihai razor shell virus 3 OX=1922647 PE=4 SV=1
MM1 pKa = 7.37KK2 pKa = 10.55RR3 pKa = 11.84LGLLLTMTFVEE14 pKa = 4.41QTEE17 pKa = 4.55HH18 pKa = 6.97VFEE21 pKa = 4.23AVRR24 pKa = 11.84NKK26 pKa = 9.93SRR28 pKa = 11.84ALINTRR34 pKa = 11.84LSEE37 pKa = 4.06IWNMTFPEE45 pKa = 3.82IRR47 pKa = 11.84LVEE50 pKa = 4.25RR51 pKa = 11.84KK52 pKa = 8.52PWEE55 pKa = 4.49SVSSTGDD62 pKa = 3.16EE63 pKa = 4.33SVLHH67 pKa = 5.2QFCMSACFVIIALFVLPVICCIVRR91 pKa = 11.84SVGAVAWDD99 pKa = 3.87HH100 pKa = 6.37LCSFALVMVEE110 pKa = 3.77LVKK113 pKa = 10.66WMLRR117 pKa = 11.84VTVAVTTVIMLVVRR131 pKa = 11.84LVWAWWYY138 pKa = 11.11NDD140 pKa = 4.78LYY142 pKa = 11.41SCMIATFLVAVVSIYY157 pKa = 10.81LLWRR161 pKa = 11.84LFEE164 pKa = 5.33ADD166 pKa = 2.92SAQIYY171 pKa = 10.69SGFEE175 pKa = 4.06SIKK178 pKa = 10.78GGTNAPFRR186 pKa = 11.84IEE188 pKa = 4.26EE189 pKa = 4.17LSIMPLGSSDD199 pKa = 4.42FEE201 pKa = 4.39ASSPSSSVVQVGFQRR216 pKa = 11.84GFGLNRR222 pKa = 11.84AFVTVGNAIYY232 pKa = 10.12FRR234 pKa = 11.84EE235 pKa = 4.34LDD237 pKa = 3.61GKK239 pKa = 10.2HH240 pKa = 5.47YY241 pKa = 10.59FSVPTHH247 pKa = 6.63VITALSSVTSAVPLLKK263 pKa = 10.55RR264 pKa = 11.84GTTVIAVEE272 pKa = 4.68RR273 pKa = 11.84ICTLGLQHH281 pKa = 6.91LAEE284 pKa = 4.27FTVLVAGQRR293 pKa = 11.84ARR295 pKa = 11.84GMASLARR302 pKa = 11.84VGHH305 pKa = 5.02VDD307 pKa = 4.33RR308 pKa = 11.84RR309 pKa = 11.84DD310 pKa = 3.26ACPVVVHH317 pKa = 6.44AHH319 pKa = 5.9TDD321 pKa = 3.23SGSALSKK328 pKa = 10.78GQLLPATGMGSSGVHH343 pKa = 5.1VFHH346 pKa = 7.04HH347 pKa = 6.04TASTDD352 pKa = 3.51KK353 pKa = 10.11GWSGGLVTMDD363 pKa = 3.56GKK365 pKa = 10.92AIGQHH370 pKa = 5.37VGWVSAKK377 pKa = 10.49DD378 pKa = 3.77PYY380 pKa = 10.74HH381 pKa = 6.81GEE383 pKa = 4.0SKK385 pKa = 11.34ANVAFNLAYY394 pKa = 10.56LYY396 pKa = 10.78AIVDD400 pKa = 3.56WKK402 pKa = 10.78LRR404 pKa = 11.84PAGDD408 pKa = 3.56RR409 pKa = 11.84SGLEE413 pKa = 3.84ADD415 pKa = 4.54SFTSPLIDD423 pKa = 3.7RR424 pKa = 11.84LVADD428 pKa = 4.44YY429 pKa = 7.83EE430 pKa = 4.32TDD432 pKa = 5.03DD433 pKa = 4.25RR434 pKa = 11.84NDD436 pKa = 3.05WYY438 pKa = 11.35VEE440 pKa = 3.91EE441 pKa = 4.81LVSPNLDD448 pKa = 2.77VTYY451 pKa = 10.51IVFNRR456 pKa = 11.84RR457 pKa = 11.84SGKK460 pKa = 7.82VSRR463 pKa = 11.84YY464 pKa = 9.38EE465 pKa = 4.08RR466 pKa = 11.84DD467 pKa = 3.53DD468 pKa = 4.04LSSDD472 pKa = 3.0KK473 pKa = 11.31SSMIRR478 pKa = 11.84RR479 pKa = 11.84YY480 pKa = 9.34IAGSGTEE487 pKa = 3.76NAEE490 pKa = 4.05FQDD493 pKa = 4.08ASSEE497 pKa = 4.06MTTACEE503 pKa = 3.88EE504 pKa = 4.42YY505 pKa = 10.3VDD507 pKa = 3.52KK508 pKa = 10.72EE509 pKa = 3.68YY510 pKa = 11.12RR511 pKa = 11.84RR512 pKa = 11.84LVRR515 pKa = 11.84EE516 pKa = 3.6IDD518 pKa = 3.64EE519 pKa = 4.78LMGSYY524 pKa = 8.79MRR526 pKa = 11.84NNGVDD531 pKa = 2.91AAMDD535 pKa = 3.28VMRR538 pKa = 11.84EE539 pKa = 3.59ITYY542 pKa = 9.81LAKK545 pKa = 10.61AQSTYY550 pKa = 10.75IQTLCDD556 pKa = 3.52NLRR559 pKa = 11.84TPNRR563 pKa = 11.84GMEE566 pKa = 4.44ALPVVPVDD574 pKa = 3.49YY575 pKa = 11.45GNLRR579 pKa = 11.84TMMVLVEE586 pKa = 4.35QYY588 pKa = 11.79ADD590 pKa = 3.13IQRR593 pKa = 11.84QLGSMAATEE602 pKa = 3.82QLAAGEE608 pKa = 3.85IRR610 pKa = 11.84ARR612 pKa = 11.84VAAGEE617 pKa = 4.22PKK619 pKa = 10.31EE620 pKa = 4.19QVARR624 pKa = 11.84DD625 pKa = 3.56QMKK628 pKa = 10.2IIANMRR634 pKa = 11.84AINAAIEE641 pKa = 4.06LCPNIGRR648 pKa = 11.84EE649 pKa = 4.14LTMLARR655 pKa = 11.84NQAQLSADD663 pKa = 3.32EE664 pKa = 4.37VTSRR668 pKa = 11.84NSMDD672 pKa = 3.12RR673 pKa = 11.84VRR675 pKa = 11.84RR676 pKa = 11.84KK677 pKa = 9.77LRR679 pKa = 11.84NEE681 pKa = 4.6GYY683 pKa = 10.73DD684 pKa = 3.54PAADD688 pKa = 3.93PATIDD693 pKa = 3.4AVIAQRR699 pKa = 11.84QALLNAQQAAKK710 pKa = 10.22AIPLRR715 pKa = 11.84PEE717 pKa = 4.05APLVIPVAAQGPEE730 pKa = 4.25SLTLDD735 pKa = 3.48YY736 pKa = 10.99YY737 pKa = 10.78RR738 pKa = 11.84RR739 pKa = 11.84KK740 pKa = 9.68SQEE743 pKa = 3.7GTNLTGFNVYY753 pKa = 10.25FDD755 pKa = 4.02PLKK758 pKa = 10.61VDD760 pKa = 3.34EE761 pKa = 5.05EE762 pKa = 4.3EE763 pKa = 4.46VIRR766 pKa = 11.84QIRR769 pKa = 11.84DD770 pKa = 3.0IKK772 pKa = 10.47QSAVSFLVPRR782 pKa = 11.84PASSGLNSEE791 pKa = 4.17VLKK794 pKa = 10.87PKK796 pKa = 10.06VAQTMPASASLSSVTQSTSAEE817 pKa = 4.17EE818 pKa = 4.38TTKK821 pKa = 11.01SPTTLPNYY829 pKa = 7.55SQCQKK834 pKa = 10.84AGSDD838 pKa = 3.54PRR840 pKa = 11.84KK841 pKa = 10.12ASMPEE846 pKa = 4.22TQCLGALNGTLSRR859 pKa = 11.84TNGLEE864 pKa = 4.0ANVNQCLPVHH874 pKa = 6.01YY875 pKa = 7.56PTLEE879 pKa = 4.3AEE881 pKa = 4.44SQQLIANSKK890 pKa = 10.26SCVEE894 pKa = 4.19TCASKK899 pKa = 10.92GVGCSQPQASQSPLEE914 pKa = 4.14KK915 pKa = 10.71VRR917 pKa = 11.84VDD919 pKa = 3.7LSEE922 pKa = 3.72MARR925 pKa = 11.84NINRR929 pKa = 11.84LANPSSAPKK938 pKa = 10.52LKK940 pKa = 9.68MGVMRR945 pKa = 11.84EE946 pKa = 4.18FFSSLASQEE955 pKa = 3.94VDD957 pKa = 4.25SEE959 pKa = 4.2LDD961 pKa = 3.47QIKK964 pKa = 10.4GLQKK968 pKa = 11.05SMEE971 pKa = 4.04QLHH974 pKa = 6.73AKK976 pKa = 9.68LNTMSAAKK984 pKa = 9.73PKK986 pKa = 10.11RR987 pKa = 11.84RR988 pKa = 11.84NASVVSKK995 pKa = 11.15

Molecular weight:
109.57 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1596

601

995

798.0

88.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.023 ± 0.801

2.256 ± 0.473

5.013 ± 0.336

6.454 ± 0.192

3.947 ± 0.979

6.642 ± 0.962

2.005 ± 0.343

4.261 ± 0.139

3.697 ± 0.279

9.273 ± 0.197

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.882 ± 0.375

3.509 ± 0.355

4.01 ± 0.182

4.386 ± 0.056

6.642 ± 0.007

8.584 ± 0.485

5.013 ± 0.445

8.271 ± 0.669

1.566 ± 0.311

2.569 ± 0.125

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski