Rhodobacter maris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3687 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A285SG54|A0A285SG54_9RHOB Myo-inositol-1(Or 4)-monophosphatase OS=Rhodobacter maris OX=446682 GN=SAMN05877831_10551 PE=4 SV=1
MM1 pKa = 6.33TTWTIQGFSGSDD13 pKa = 3.29LIIAEE18 pKa = 4.58GGSTLSVGSNFMLDD32 pKa = 3.84PTWDD36 pKa = 3.35ASTDD40 pKa = 3.24ATSYY44 pKa = 10.63TFTDD48 pKa = 3.79PDD50 pKa = 3.75DD51 pKa = 4.25TNLSGDD57 pKa = 3.75NLNNEE62 pKa = 4.64HH63 pKa = 6.9GNDD66 pKa = 3.68GNQTINVYY74 pKa = 10.42DD75 pKa = 3.48SSGTLIHH82 pKa = 6.61SGQVYY87 pKa = 10.17IEE89 pKa = 4.64DD90 pKa = 3.75SAVFTAPDD98 pKa = 3.86GSSITLYY105 pKa = 9.16TLEE108 pKa = 4.14VNGVVVGTVTSAPLVPGVTYY128 pKa = 10.47HH129 pKa = 5.02VTAINDD135 pKa = 3.48VTTGPLYY142 pKa = 10.16TALASTTYY150 pKa = 11.08DD151 pKa = 3.42PDD153 pKa = 3.47LANTVTGGDD162 pKa = 3.71YY163 pKa = 11.07ADD165 pKa = 5.22SITGGAGNDD174 pKa = 4.08TITTGAGSDD183 pKa = 3.88TIDD186 pKa = 3.66GGTGNDD192 pKa = 3.7SIQFGTGGDD201 pKa = 3.87SVHH204 pKa = 6.93GGDD207 pKa = 4.03GNDD210 pKa = 4.42YY211 pKa = 10.44IDD213 pKa = 5.72DD214 pKa = 4.15YY215 pKa = 11.62AGSTGYY221 pKa = 10.74VYY223 pKa = 11.24NDD225 pKa = 3.72TLYY228 pKa = 11.47GDD230 pKa = 4.74AGNDD234 pKa = 3.62TIFAGSGNDD243 pKa = 3.77YY244 pKa = 11.27VDD246 pKa = 4.45GGADD250 pKa = 3.21NDD252 pKa = 4.06NIYY255 pKa = 11.21GEE257 pKa = 5.03DD258 pKa = 4.07GNDD261 pKa = 3.51TLLGGAGCDD270 pKa = 3.6WIEE273 pKa = 4.35GGAGADD279 pKa = 4.12SIDD282 pKa = 3.92GGTGTDD288 pKa = 3.86IILGGDD294 pKa = 3.75GNDD297 pKa = 4.2TIHH300 pKa = 6.85GGDD303 pKa = 3.56GADD306 pKa = 3.37YY307 pKa = 10.94LAGNTGNDD315 pKa = 3.35VLYY318 pKa = 11.21GEE320 pKa = 5.24ADD322 pKa = 3.17ADD324 pKa = 3.54RR325 pKa = 11.84FYY327 pKa = 11.43FEE329 pKa = 5.42NGWGSDD335 pKa = 3.21TVYY338 pKa = 11.0GGSTTTAGGVDD349 pKa = 5.12LDD351 pKa = 4.4TLDD354 pKa = 4.06FSYY357 pKa = 9.84DD358 pKa = 3.48TVSGVSVTFTDD369 pKa = 3.8WEE371 pKa = 4.95DD372 pKa = 3.38GTATDD377 pKa = 4.0GTSTVTFDD385 pKa = 4.25NIEE388 pKa = 4.51GIYY391 pKa = 9.1GTAFGDD397 pKa = 4.06TINASADD404 pKa = 3.51GSGLTLDD411 pKa = 4.2GQAGNDD417 pKa = 3.94SIIGGSGDD425 pKa = 3.75DD426 pKa = 4.74CILGGAGDD434 pKa = 4.0DD435 pKa = 4.23TIFSGFGNDD444 pKa = 3.01TVYY447 pKa = 11.14GGDD450 pKa = 3.89GNDD453 pKa = 4.59SIDD456 pKa = 4.07DD457 pKa = 3.75KK458 pKa = 11.64SGVLAEE464 pKa = 4.52TYY466 pKa = 10.07TNYY469 pKa = 10.09VDD471 pKa = 5.24AGAGNDD477 pKa = 3.64TVFTGGGSDD486 pKa = 3.71TILGGEE492 pKa = 4.92GDD494 pKa = 4.34DD495 pKa = 4.3QLHH498 pKa = 6.64AEE500 pKa = 4.52AGDD503 pKa = 3.63DD504 pKa = 3.99LVYY507 pKa = 11.03GGAGADD513 pKa = 3.63TLWGNEE519 pKa = 4.11GADD522 pKa = 3.97TLWGGDD528 pKa = 3.5GADD531 pKa = 4.53SILGGIGDD539 pKa = 4.05DD540 pKa = 5.08LIYY543 pKa = 11.25GEE545 pKa = 5.27AGNDD549 pKa = 3.82TITGGDD555 pKa = 3.62GADD558 pKa = 4.16SISGGADD565 pKa = 2.9NDD567 pKa = 4.27VITGDD572 pKa = 4.74LGDD575 pKa = 4.26DD576 pKa = 3.71TLAGGTGADD585 pKa = 3.73TLTGGTGADD594 pKa = 3.59TYY596 pKa = 11.79VMSDD600 pKa = 2.87GDD602 pKa = 4.01GADD605 pKa = 3.24TVTDD609 pKa = 3.91FDD611 pKa = 3.72MTMVSGLTTDD621 pKa = 3.29QFDD624 pKa = 3.74VSGLKK629 pKa = 10.18DD630 pKa = 3.42AEE632 pKa = 4.28GNPVNVWDD640 pKa = 3.92VTVDD644 pKa = 3.33SDD646 pKa = 3.85EE647 pKa = 4.14QGNAVLFFPDD657 pKa = 3.75GTSVTLIGVSKK668 pKa = 9.65TSVNTAPMLHH678 pKa = 6.68AMGIPCLVAGSPVATPRR695 pKa = 11.84GPVAVEE701 pKa = 3.42QLVPGDD707 pKa = 3.93LVITASGAAEE717 pKa = 3.74PVLWTGARR725 pKa = 11.84AVTAAEE731 pKa = 4.03MAADD735 pKa = 3.88PRR737 pKa = 11.84LLPVEE742 pKa = 4.51IGAGRR747 pKa = 11.84LGNAAPVRR755 pKa = 11.84LSALHH760 pKa = 6.12AVHH763 pKa = 6.47VPARR767 pKa = 11.84GGALARR773 pKa = 11.84AGHH776 pKa = 5.87MAATGWGGARR786 pKa = 11.84ILHH789 pKa = 5.67GLARR793 pKa = 11.84QEE795 pKa = 3.63AGLRR799 pKa = 11.84YY800 pKa = 9.25HH801 pKa = 6.89HH802 pKa = 7.04LLLPRR807 pKa = 11.84HH808 pKa = 5.83ALISVAGLWVEE819 pKa = 4.26SFWPGRR825 pKa = 11.84QGLAGLDD832 pKa = 3.5PASRR836 pKa = 11.84TRR838 pKa = 11.84LIRR841 pKa = 11.84ARR843 pKa = 11.84PQLAQVLWGGASVAACYY860 pKa = 9.04SQPAAPFLRR869 pKa = 11.84RR870 pKa = 11.84RR871 pKa = 11.84EE872 pKa = 3.9IDD874 pKa = 3.38RR875 pKa = 11.84AACSNWSLLARR886 pKa = 11.84EE887 pKa = 4.9KK888 pKa = 10.36PHH890 pKa = 7.43SDD892 pKa = 2.79GFQASSGQASTLL904 pKa = 3.57

Molecular weight: 91.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A285RL35|A0A285RL35_9RHOB SSU ribosomal protein S13P OS=Rhodobacter maris OX=446682 GN=SAMN05877831_101642 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.43LVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.38GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.43GGRR28 pKa = 11.84KK29 pKa = 8.99VLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.53GRR39 pKa = 11.84KK40 pKa = 8.73VLSAA44 pKa = 4.05

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3687

0

3687

1149499

25

2405

311.8

33.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.953 ± 0.073

0.906 ± 0.013

5.335 ± 0.043

6.137 ± 0.041

3.602 ± 0.025

8.843 ± 0.044

1.98 ± 0.019

4.807 ± 0.027

3.031 ± 0.033

10.565 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.657 ± 0.02

2.192 ± 0.022

5.431 ± 0.038

2.921 ± 0.024

7.078 ± 0.047

4.801 ± 0.027

5.28 ± 0.029

7.089 ± 0.033

1.361 ± 0.016

2.031 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski