Acetobacteraceae bacterium

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1743 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P7W745|A0A4P7W745_9PROT Lytic murein transglycosylase OS=Acetobacteraceae bacterium OX=1909293 GN=FAI41_00350 PE=4 SV=1
MM1 pKa = 6.73NTQYY5 pKa = 11.3DD6 pKa = 3.95DD7 pKa = 4.75SEE9 pKa = 4.37EE10 pKa = 4.28SPNPSSSHH18 pKa = 5.35YY19 pKa = 10.06VDD21 pKa = 4.01EE22 pKa = 4.48EE23 pKa = 4.17AVIEE27 pKa = 4.89AISEE31 pKa = 4.39VYY33 pKa = 10.58DD34 pKa = 3.45PEE36 pKa = 5.22IPVNVYY42 pKa = 10.83DD43 pKa = 5.18LGLIYY48 pKa = 10.47AIDD51 pKa = 3.63LHH53 pKa = 7.92DD54 pKa = 5.15DD55 pKa = 3.24GRR57 pKa = 11.84VIVEE61 pKa = 4.2MSLTAPNCPSAQEE74 pKa = 4.13LPEE77 pKa = 4.27MIRR80 pKa = 11.84DD81 pKa = 3.67SVATVKK87 pKa = 10.71NVTNVEE93 pKa = 4.33VKK95 pKa = 10.27VVWDD99 pKa = 4.54PPWEE103 pKa = 4.0MSRR106 pKa = 11.84MSDD109 pKa = 3.8AARR112 pKa = 11.84LALNLFF118 pKa = 4.25

Molecular weight: 13.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P7WB64|A0A4P7WB64_9PROT Probable multidrug resistance protein NorM OS=Acetobacteraceae bacterium OX=1909293 GN=FAI41_08560 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 8.95RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.64GFRR19 pKa = 11.84SRR21 pKa = 11.84SATVGGRR28 pKa = 11.84RR29 pKa = 11.84VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.1GRR39 pKa = 11.84KK40 pKa = 8.83KK41 pKa = 10.63LSAA44 pKa = 3.95

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1743

0

1743

564209

41

2264

323.7

35.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.912 ± 0.061

1.109 ± 0.021

4.728 ± 0.039

6.759 ± 0.074

4.689 ± 0.05

7.305 ± 0.082

2.262 ± 0.025

6.332 ± 0.043

6.47 ± 0.058

10.671 ± 0.08

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.216 ± 0.023

3.981 ± 0.048

4.906 ± 0.038

3.937 ± 0.035

4.849 ± 0.053

6.654 ± 0.045

4.832 ± 0.047

5.432 ± 0.054

1.349 ± 0.024

2.609 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski