Capreolus capreolus papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Deltapapillomavirus; Deltapapillomavirus 5

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B3ST97|B3ST97_9PAPI Major capsid protein L1 OS=Capreolus capreolus papillomavirus 1 OX=470214 GN=L1 PE=3 SV=1
MM1 pKa = 7.74PPLKK5 pKa = 9.92RR6 pKa = 11.84VKK8 pKa = 10.12RR9 pKa = 11.84ANVYY13 pKa = 10.56DD14 pKa = 4.31LYY16 pKa = 10.21RR17 pKa = 11.84TCKK20 pKa = 9.53QAGTCPADD28 pKa = 3.55VIPKK32 pKa = 9.85VEE34 pKa = 4.18GKK36 pKa = 8.14TVADD40 pKa = 4.93KK41 pKa = 10.72ILQYY45 pKa = 11.24GSLGVYY51 pKa = 10.45LGGLGIGTGMGKK63 pKa = 9.95APPGGYY69 pKa = 9.67VPLRR73 pKa = 11.84GGGSSASLPSNPFAGGIPLEE93 pKa = 4.39SLEE96 pKa = 4.4TWGSFRR102 pKa = 11.84PGIIEE107 pKa = 4.06DD108 pKa = 3.83AGPLVEE114 pKa = 4.69GTVPDD119 pKa = 4.17APAVIIPEE127 pKa = 4.23SVPVDD132 pKa = 3.55EE133 pKa = 5.46GVSGLDD139 pKa = 3.26VSSDD143 pKa = 2.78ISTDD147 pKa = 3.25TAITFLSAEE156 pKa = 4.22GADD159 pKa = 4.3DD160 pKa = 3.69IAVLEE165 pKa = 4.21VRR167 pKa = 11.84PTEE170 pKa = 3.96HH171 pKa = 6.54LQPHH175 pKa = 5.53VMSRR179 pKa = 11.84SNFQNPLYY187 pKa = 9.92QPPVRR192 pKa = 11.84HH193 pKa = 6.22ASVIADD199 pKa = 3.45TSGSEE204 pKa = 4.07NILVGGTGVGSQSGEE219 pKa = 4.22SIEE222 pKa = 5.08LSLFNGPRR230 pKa = 11.84TSTPAEE236 pKa = 3.94PFQGRR241 pKa = 11.84KK242 pKa = 9.67GLFNWFSKK250 pKa = 10.3RR251 pKa = 11.84YY252 pKa = 5.78YY253 pKa = 8.32TQVPVEE259 pKa = 4.88DD260 pKa = 4.44PDD262 pKa = 4.14EE263 pKa = 4.1IAAAGSYY270 pKa = 9.73VFEE273 pKa = 4.51NPVYY277 pKa = 10.31DD278 pKa = 3.79SKK280 pKa = 11.6AYY282 pKa = 9.77KK283 pKa = 10.11PEE285 pKa = 3.91QQLDD289 pKa = 3.83TLQPAQEE296 pKa = 4.21SEE298 pKa = 4.33YY299 pKa = 10.45TSAARR304 pKa = 11.84ILQGPSGRR312 pKa = 11.84IGVSRR317 pKa = 11.84VSRR320 pKa = 11.84PTSIGTRR327 pKa = 11.84SGVRR331 pKa = 11.84VGPLYY336 pKa = 10.52HH337 pKa = 6.65LRR339 pKa = 11.84HH340 pKa = 6.04SFSTIDD346 pKa = 3.55EE347 pKa = 4.44PVSLEE352 pKa = 4.09LLPLITEE359 pKa = 4.35DD360 pKa = 4.44SEE362 pKa = 4.79VLTSVTEE369 pKa = 3.96AHH371 pKa = 6.85LGTEE375 pKa = 4.15DD376 pKa = 5.18FEE378 pKa = 7.41DD379 pKa = 3.81IDD381 pKa = 5.18LEE383 pKa = 4.6SFDD386 pKa = 5.36SDD388 pKa = 3.28MTLFEE393 pKa = 4.56STDD396 pKa = 3.12HH397 pKa = 6.99HH398 pKa = 6.79ISQGAGGRR406 pKa = 11.84RR407 pKa = 11.84RR408 pKa = 11.84LLLPVTHH415 pKa = 6.68TKK417 pKa = 10.59SLGVGAISSSAQGQGIAYY435 pKa = 8.91EE436 pKa = 3.96DD437 pKa = 3.57TEE439 pKa = 4.49YY440 pKa = 11.45VNEE443 pKa = 4.24NGGHH447 pKa = 6.38GSTPTVVIDD456 pKa = 4.24GNINLQEE463 pKa = 3.98VLYY466 pKa = 10.0RR467 pKa = 11.84QYY469 pKa = 11.19FLHH472 pKa = 6.91PSLMKK477 pKa = 10.12RR478 pKa = 11.84KK479 pKa = 9.3RR480 pKa = 11.84RR481 pKa = 11.84RR482 pKa = 11.84KK483 pKa = 9.67RR484 pKa = 11.84LFGG487 pKa = 3.91

Molecular weight: 52.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B3ST95|B3ST95_9PAPI E5 OS=Capreolus capreolus papillomavirus 1 OX=470214 PE=4 SV=1
MM1 pKa = 7.27ATMCFTHH8 pKa = 7.04LLVHH12 pKa = 7.0PLTLDD17 pKa = 3.46TTLKK21 pKa = 10.85ACGNTTTTQCQGGPTRR37 pKa = 11.84PTEE40 pKa = 4.08PSLTLLLDD48 pKa = 3.76TLPFTVPSEE57 pKa = 3.97LAKK60 pKa = 10.29TGIGPQVARR69 pKa = 11.84LPTHH73 pKa = 5.61LTPRR77 pKa = 11.84GVLLAAIPPPRR88 pKa = 11.84CRR90 pKa = 11.84ARR92 pKa = 11.84YY93 pKa = 8.3RR94 pKa = 11.84WVINEE99 pKa = 3.48GRR101 pKa = 11.84KK102 pKa = 8.01ATRR105 pKa = 11.84HH106 pKa = 4.78HH107 pKa = 6.52HH108 pKa = 4.9QTPQKK113 pKa = 10.73

Molecular weight: 12.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2414

46

612

301.8

33.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.628 ± 0.591

2.527 ± 0.751

5.178 ± 0.374

5.468 ± 0.323

4.101 ± 0.416

7.457 ± 0.818

2.486 ± 0.325

3.48 ± 0.392

4.722 ± 0.569

9.486 ± 0.65

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.864 ± 0.249

3.563 ± 0.468

6.545 ± 0.789

4.432 ± 0.382

5.965 ± 0.449

8.119 ± 0.994

6.794 ± 0.7

6.545 ± 0.371

1.574 ± 0.358

3.065 ± 0.221
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski