Primate bocaparvovirus 1 (strain Human bocavirus 1 type 1) (HBoV1) (Human bocavirus type 1)

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Bocaparvovirus; Primate bocaparvovirus 1

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q3YPH4-2|CAPSD-2_HBOC1 Isoform of Q3YPH4 Isoform Minor capsid protein VP2 of Minor capsid protein VP1 OS=Primate bocaparvovirus 1 (strain Human bocavirus 1 type 1) OX=689403 GN=VP1 PE=1 SV=1
MM1 pKa = 7.91AYY3 pKa = 10.11GGRR6 pKa = 11.84GPWEE10 pKa = 4.18HH11 pKa = 7.08LPEE14 pKa = 5.53DD15 pKa = 4.03FTLHH19 pKa = 5.9EE20 pKa = 4.77NGYY23 pKa = 8.48CTDD26 pKa = 3.57CGGYY30 pKa = 10.16LPHH33 pKa = 7.0SADD36 pKa = 2.72NSMYY40 pKa = 10.02TDD42 pKa = 3.68RR43 pKa = 11.84ASEE46 pKa = 4.15TSTGDD51 pKa = 3.04ITPSDD56 pKa = 4.17LGDD59 pKa = 3.58SDD61 pKa = 6.05GEE63 pKa = 4.19DD64 pKa = 3.79TEE66 pKa = 5.34PEE68 pKa = 4.16TSQVDD73 pKa = 3.39YY74 pKa = 10.99CPPKK78 pKa = 10.12KK79 pKa = 10.01RR80 pKa = 11.84RR81 pKa = 11.84LTAPASPPNSPASSVSTITFFNTWHH106 pKa = 6.07AQPRR110 pKa = 11.84DD111 pKa = 3.47EE112 pKa = 5.66DD113 pKa = 3.57EE114 pKa = 3.96LRR116 pKa = 11.84EE117 pKa = 4.07YY118 pKa = 10.51EE119 pKa = 4.19RR120 pKa = 11.84QASLLQKK127 pKa = 10.19KK128 pKa = 9.63RR129 pKa = 11.84EE130 pKa = 3.91SRR132 pKa = 11.84KK133 pKa = 9.77RR134 pKa = 11.84GEE136 pKa = 4.28EE137 pKa = 3.49EE138 pKa = 3.76TLADD142 pKa = 3.92NSSQEE147 pKa = 4.32QEE149 pKa = 4.2PQPDD153 pKa = 3.54PTQWGEE159 pKa = 3.83RR160 pKa = 11.84LGFISSGTPNQPPIVLHH177 pKa = 6.12CFEE180 pKa = 5.58DD181 pKa = 4.13LRR183 pKa = 11.84PSDD186 pKa = 4.13EE187 pKa = 5.84DD188 pKa = 3.13EE189 pKa = 4.5GEE191 pKa = 4.28YY192 pKa = 10.11IGEE195 pKa = 4.13KK196 pKa = 10.01RR197 pKa = 11.84QQ198 pKa = 3.24

Molecular weight: 22.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|D0EZM8-2|NS1-2_HBOC1 Isoform of D0EZM8 Isoform NS1-70 of Initiator protein NS1 OS=Primate bocaparvovirus 1 (strain Human bocavirus 1 type 1) OX=689403 GN=NS1 PE=1 SV=1
MM1 pKa = 7.65SSGNMKK7 pKa = 10.39DD8 pKa = 2.71KK9 pKa = 10.78HH10 pKa = 6.39RR11 pKa = 11.84SYY13 pKa = 10.78KK14 pKa = 10.43RR15 pKa = 11.84KK16 pKa = 9.64GSPEE20 pKa = 3.37RR21 pKa = 11.84GEE23 pKa = 4.79RR24 pKa = 11.84KK25 pKa = 9.5RR26 pKa = 11.84HH27 pKa = 4.27WQTTHH32 pKa = 5.44HH33 pKa = 7.14RR34 pKa = 11.84SRR36 pKa = 11.84SRR38 pKa = 11.84SPIRR42 pKa = 11.84HH43 pKa = 5.29SGEE46 pKa = 4.01RR47 pKa = 11.84GSGSYY52 pKa = 9.62HH53 pKa = 5.13QEE55 pKa = 3.68HH56 pKa = 7.52PISHH60 pKa = 7.22LSSCTASKK68 pKa = 9.97TSDD71 pKa = 2.93QVMKK75 pKa = 10.19TRR77 pKa = 11.84EE78 pKa = 4.1STSGKK83 pKa = 9.7KK84 pKa = 10.0DD85 pKa = 3.23NRR87 pKa = 11.84TNPYY91 pKa = 9.31TVFSQHH97 pKa = 6.31RR98 pKa = 11.84ASNPEE103 pKa = 3.64APGWCGFYY111 pKa = 9.51WHH113 pKa = 6.33STRR116 pKa = 11.84IARR119 pKa = 11.84DD120 pKa = 3.46GTNSIFNEE128 pKa = 4.27MKK130 pKa = 10.4QQFQQLQIDD139 pKa = 4.28NKK141 pKa = 10.42IGWDD145 pKa = 3.43NTRR148 pKa = 11.84EE149 pKa = 3.89LLFNQKK155 pKa = 8.12KK156 pKa = 7.62TLDD159 pKa = 3.31QKK161 pKa = 9.62YY162 pKa = 10.72RR163 pKa = 11.84NMFWHH168 pKa = 6.58FRR170 pKa = 11.84NNSDD174 pKa = 5.36CEE176 pKa = 4.02RR177 pKa = 11.84CNYY180 pKa = 8.91WDD182 pKa = 3.44DD183 pKa = 3.41VYY185 pKa = 11.07RR186 pKa = 11.84RR187 pKa = 11.84HH188 pKa = 6.25LANVSSQTEE197 pKa = 3.66ADD199 pKa = 4.06EE200 pKa = 4.4ITDD203 pKa = 3.89EE204 pKa = 4.33EE205 pKa = 4.43MLSAAEE211 pKa = 4.11SMEE214 pKa = 4.4ADD216 pKa = 3.41ASNN219 pKa = 3.14

Molecular weight: 25.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

6

9

4610

198

781

512.2

57.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.705 ± 0.136

2.56 ± 0.306

5.553 ± 0.246

6.009 ± 0.677

3.731 ± 0.123

7.332 ± 0.432

3.189 ± 0.297

4.794 ± 0.244

5.249 ± 0.233

7.896 ± 0.936

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.104 ± 0.152

5.77 ± 0.477

6.79 ± 0.346

5.054 ± 0.119

4.685 ± 0.401

6.421 ± 0.44

7.158 ± 0.433

4.252 ± 0.359

1.887 ± 0.139

3.861 ± 0.25
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski