Hypocrea virens (strain Gv29-8 / FGSC 10586) (Gliocladium virens) (Trichoderma virens)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Trichoderma; Trichoderma virens

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12389 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G9N408|G9N408_HYPVG GST N-terminal domain-containing protein OS=Hypocrea virens (strain Gv29-8 / FGSC 10586) OX=413071 GN=TRIVIDRAFT_68359 PE=4 SV=1
MM1 pKa = 7.64VLDD4 pKa = 5.72DD5 pKa = 4.44EE6 pKa = 5.78ADD8 pKa = 3.92PNSSQSPLFGDD19 pKa = 4.62GFIHH23 pKa = 7.34PISKK27 pKa = 10.41SPISRR32 pKa = 11.84PPVSSIKK39 pKa = 10.57VFARR43 pKa = 11.84DD44 pKa = 3.24LSDD47 pKa = 3.3YY48 pKa = 11.79AEE50 pKa = 4.23FTRR53 pKa = 11.84EE54 pKa = 4.07FFCEE58 pKa = 4.09CDD60 pKa = 3.69DD61 pKa = 4.65EE62 pKa = 4.89KK63 pKa = 10.84WPPDD67 pKa = 3.96TPPDD71 pKa = 3.31ILSNISYY78 pKa = 9.2PCSCPGGYY86 pKa = 9.2NAPPPLEE93 pKa = 5.2IIGSGPNGLVTIGDD107 pKa = 3.9YY108 pKa = 11.39SDD110 pKa = 3.31ATT112 pKa = 3.7

Molecular weight: 12.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G9ME33|G9ME33_HYPVG Uncharacterized protein (Fragment) OS=Hypocrea virens (strain Gv29-8 / FGSC 10586) OX=413071 GN=TRIVIDRAFT_18141 PE=4 SV=1
MM1 pKa = 7.97PFTTHH6 pKa = 6.61RR7 pKa = 11.84RR8 pKa = 11.84HH9 pKa = 5.76HH10 pKa = 6.31HH11 pKa = 4.84TTTTTTARR19 pKa = 11.84PYY21 pKa = 10.08RR22 pKa = 11.84RR23 pKa = 11.84SIFSRR28 pKa = 11.84RR29 pKa = 11.84APRR32 pKa = 11.84VHH34 pKa = 6.38HH35 pKa = 5.5QRR37 pKa = 11.84KK38 pKa = 6.91PTLKK42 pKa = 10.45DD43 pKa = 3.27KK44 pKa = 11.46VSGALTRR51 pKa = 11.84LRR53 pKa = 11.84GSLTRR58 pKa = 11.84RR59 pKa = 11.84PGVKK63 pKa = 9.72AAGIRR68 pKa = 11.84RR69 pKa = 11.84MRR71 pKa = 11.84GTDD74 pKa = 2.77GRR76 pKa = 11.84GSHH79 pKa = 5.71RR80 pKa = 11.84RR81 pKa = 11.84RR82 pKa = 11.84RR83 pKa = 11.84FFF85 pKa = 4.33

Molecular weight: 10.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12383

6

12389

5835099

44

20891

471.0

52.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.677 ± 0.021

1.295 ± 0.01

5.759 ± 0.015

6.091 ± 0.022

3.822 ± 0.013

6.795 ± 0.021

2.365 ± 0.01

5.287 ± 0.017

4.905 ± 0.02

9.087 ± 0.022

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.227 ± 0.008

3.77 ± 0.012

5.711 ± 0.021

4.042 ± 0.014

5.857 ± 0.02

8.085 ± 0.025

5.775 ± 0.017

6.094 ± 0.017

1.531 ± 0.008

2.825 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski