Shearwaterpox virus

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Avipoxvirus; Canarypox virus

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 305 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V0S7S5|A0A1V0S7S5_CNPV DNA-directed RNA polymerase 18 kDa subunit OS=Shearwaterpox virus OX=1974596 GN=SWPV1-068 PE=3 SV=1
MM1 pKa = 7.18IVKK4 pKa = 8.37MHH6 pKa = 7.47LINIFVCIICINLTYY21 pKa = 10.18SYY23 pKa = 10.74RR24 pKa = 11.84IIDD27 pKa = 4.08FSNGANNKK35 pKa = 9.26IFGSGSGSGSEE46 pKa = 4.2NGSGSGSGDD55 pKa = 3.46DD56 pKa = 4.75ALPSSITNIISRR68 pKa = 11.84DD69 pKa = 3.15GSGYY73 pKa = 10.63DD74 pKa = 3.85DD75 pKa = 4.86GSVTTDD81 pKa = 2.62ISVTTDD87 pKa = 2.59ISVTTDD93 pKa = 2.74SSVTTDD99 pKa = 3.0SSVTTDD105 pKa = 3.0SSVTTDD111 pKa = 3.04SSVTIDD117 pKa = 3.95NDD119 pKa = 3.38NKK121 pKa = 10.46YY122 pKa = 11.03LSILTIIYY130 pKa = 10.74SMLRR134 pKa = 11.84SFFSAA139 pKa = 3.79

Molecular weight: 14.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V0S809|A0A1V0S809_CNPV SWPV1-113 OS=Shearwaterpox virus OX=1974596 GN=SWPV1-113 PE=4 SV=1
MM1 pKa = 7.28IRR3 pKa = 11.84IIFKK7 pKa = 10.41YY8 pKa = 9.69NSIYY12 pKa = 8.53VTRR15 pKa = 11.84LLVLTLILLISVFLLRR31 pKa = 11.84RR32 pKa = 11.84ISFIYY37 pKa = 10.46KK38 pKa = 10.4NILLLVKK45 pKa = 9.46MDD47 pKa = 3.83NMCNTIMM54 pKa = 4.96

Molecular weight: 6.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

305

0

305

97274

47

1939

318.9

36.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.356 ± 0.102

2.266 ± 0.081

6.317 ± 0.086

5.67 ± 0.109

4.136 ± 0.105

3.718 ± 0.096

1.94 ± 0.047

10.441 ± 0.175

8.698 ± 0.134

9.236 ± 0.143

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.432 ± 0.047

7.899 ± 0.146

2.813 ± 0.083

1.83 ± 0.067

3.871 ± 0.097

7.684 ± 0.151

5.399 ± 0.096

5.674 ± 0.086

0.655 ± 0.034

5.966 ± 0.079
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski