Giraffa camelopardalis papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Deltapapillomavirus; Deltapapillomavirus 7

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3GV90|A0A1L3GV90_9PAPI E5 protein OS=Giraffa camelopardalis papillomavirus 1 OX=1922325 GN=E5 PE=4 SV=1
MM1 pKa = 7.51ASVRR5 pKa = 11.84RR6 pKa = 11.84VKK8 pKa = 10.41RR9 pKa = 11.84ASAADD14 pKa = 4.16LYY16 pKa = 9.65RR17 pKa = 11.84TCKK20 pKa = 10.51ASNTCPPDD28 pKa = 3.74VIPKK32 pKa = 9.92IEE34 pKa = 4.35GSTIADD40 pKa = 4.11KK41 pKa = 10.74ILQYY45 pKa = 11.28GSLGVFFGGLGIGTGRR61 pKa = 11.84GSAAVVPGVTVPKK74 pKa = 10.13LVSRR78 pKa = 11.84GGGYY82 pKa = 9.79QPLNTSSSSISLTSTGSVRR101 pKa = 11.84GVAARR106 pKa = 11.84LRR108 pKa = 11.84EE109 pKa = 4.23FNVLPPATEE118 pKa = 4.21VIPLEE123 pKa = 4.33TFASGGAEE131 pKa = 4.15GISPSVEE138 pKa = 3.85LVPEE142 pKa = 4.34SSSILTPEE150 pKa = 3.98NGLAEE155 pKa = 4.28TALGAEE161 pKa = 4.55VFADD165 pKa = 3.56TDD167 pKa = 3.62TTLITLHH174 pKa = 6.91SDD176 pKa = 3.63TGPGDD181 pKa = 3.62VAVLEE186 pKa = 4.35LRR188 pKa = 11.84PTEE191 pKa = 4.36NDD193 pKa = 3.33LQAHH197 pKa = 5.79TLTRR201 pKa = 11.84GPSAHH206 pKa = 6.23TPSFVDD212 pKa = 3.07THH214 pKa = 8.19AVMFGEE220 pKa = 4.68TSSSEE225 pKa = 3.78NVFIGGANVGNVEE238 pKa = 4.16GEE240 pKa = 4.26FIEE243 pKa = 5.72LSNLDD248 pKa = 4.08PRR250 pKa = 11.84TSTPEE255 pKa = 3.83GEE257 pKa = 4.47ARR259 pKa = 11.84PPARR263 pKa = 11.84GRR265 pKa = 11.84GVWNWFSKK273 pKa = 10.22RR274 pKa = 11.84YY275 pKa = 8.81YY276 pKa = 9.92SQVPVTDD283 pKa = 3.95PDD285 pKa = 4.07FVSSYY290 pKa = 9.39TFEE293 pKa = 4.35NPLYY297 pKa = 9.44EE298 pKa = 4.35YY299 pKa = 11.19ADD301 pKa = 3.91GVQTGQSFPTVSNQGRR317 pKa = 11.84VGISRR322 pKa = 11.84LGWQEE327 pKa = 3.81GVSTRR332 pKa = 11.84SGAQVGRR339 pKa = 11.84ALHH342 pKa = 6.0LRR344 pKa = 11.84YY345 pKa = 9.9SLSSIEE351 pKa = 4.27NPPVDD356 pKa = 4.9VIPLSISAGEE366 pKa = 4.15EE367 pKa = 3.86GTLQQEE373 pKa = 4.41VSFQVSDD380 pKa = 3.7DD381 pKa = 3.8TFDD384 pKa = 3.65TVDD387 pKa = 3.53LFEE390 pKa = 7.32DD391 pKa = 3.64EE392 pKa = 5.02DD393 pKa = 4.89APLLRR398 pKa = 11.84TEE400 pKa = 3.93QHH402 pKa = 5.13TLRR405 pKa = 11.84TGSRR409 pKa = 11.84RR410 pKa = 11.84NTVTPVLHH418 pKa = 6.73RR419 pKa = 11.84PHH421 pKa = 6.86IAGATVFDD429 pKa = 4.27KK430 pKa = 11.32AVGVKK435 pKa = 10.17GQGGSSTVPVDD446 pKa = 3.13TDD448 pKa = 3.25GGVIVDD454 pKa = 4.11HH455 pKa = 7.65DD456 pKa = 4.89DD457 pKa = 3.69YY458 pKa = 11.91VPTSTPTIIIDD469 pKa = 3.44NEE471 pKa = 3.98LAVWFHH477 pKa = 7.32SYY479 pKa = 10.37FLHH482 pKa = 6.86PSKK485 pKa = 10.59LGKK488 pKa = 9.86RR489 pKa = 11.84KK490 pKa = 9.84RR491 pKa = 11.84KK492 pKa = 10.0RR493 pKa = 11.84SDD495 pKa = 2.98SSVV498 pKa = 2.79

Molecular weight: 52.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3GV75|A0A1L3GV75_9PAPI Regulatory protein E2 OS=Giraffa camelopardalis papillomavirus 1 OX=1922325 GN=E2 PE=3 SV=1
DDD2 pKa = 4.31KKK4 pKa = 11.09DD5 pKa = 3.42LIILILRR12 pKa = 11.84LPEEE16 pKa = 4.07NLTDDD21 pKa = 3.53TSRR24 pKa = 11.84TVTQEEE30 pKa = 3.72DD31 pKa = 4.24QPTQPSLSLLEEE43 pKa = 4.3KKK45 pKa = 9.46QQVALSEEE53 pKa = 4.16EE54 pKa = 4.19AVGYYY59 pKa = 7.28VCLARR64 pKa = 11.84TPTIYYY70 pKa = 10.05GPRR73 pKa = 11.84GTHHH77 pKa = 6.03HH78 pKa = 7.31YYY80 pKa = 10.97PPPRR84 pKa = 11.84CRR86 pKa = 11.84ARR88 pKa = 11.84YYY90 pKa = 8.21WTWHHH95 pKa = 4.25VRR97 pKa = 11.84KKK99 pKa = 9.48HH100 pKa = 5.06RR101 pKa = 11.84PRR103 pKa = 11.84RR104 pKa = 11.84ARR106 pKa = 11.84IPRR109 pKa = 11.84S

Molecular weight: 12.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2411

41

609

301.4

33.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.341 ± 0.67

2.696 ± 0.632

5.185 ± 0.404

5.599 ± 0.322

3.857 ± 0.595

7.217 ± 0.768

2.655 ± 0.236

3.401 ± 0.455

5.019 ± 0.757

8.752 ± 0.672

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.701 ± 0.405

3.608 ± 0.627

6.429 ± 0.637

4.521 ± 0.633

5.973 ± 0.782

7.756 ± 0.682

6.678 ± 0.667

7.01 ± 0.618

1.493 ± 0.24

3.111 ± 0.395
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski