Amino acid dipepetide frequency for Botrytis cinerea fusarivirus 1-S2

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.319AlaAla: 3.319 ± 3.809
0.0AlaCys: 0.0 ± 0.0
3.319AlaAsp: 3.319 ± 3.809
2.212AlaGlu: 2.212 ± 0.994
6.637AlaPhe: 6.637 ± 2.319
3.319AlaGly: 3.319 ± 1.491
2.212AlaHis: 2.212 ± 0.994
3.319AlaIle: 3.319 ± 3.809
3.319AlaLys: 3.319 ± 1.159
9.956AlaLeu: 9.956 ± 1.822
4.425AlaMet: 4.425 ± 0.662
1.106AlaAsn: 1.106 ± 0.497
3.319AlaPro: 3.319 ± 1.491
5.531AlaGln: 5.531 ± 0.166
6.637AlaArg: 6.637 ± 2.981
5.531AlaSer: 5.531 ± 0.166
3.319AlaThr: 3.319 ± 1.159
1.106AlaVal: 1.106 ± 0.497
1.106AlaTrp: 1.106 ± 0.497
2.212AlaTyr: 2.212 ± 0.994
0.0AlaXaa: 0.0 ± 0.0
Cys
1.106CysAla: 1.106 ± 0.497
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
2.212CysLeu: 2.212 ± 4.306
0.0CysMet: 0.0 ± 0.0
1.106CysAsn: 1.106 ± 0.497
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.106CysSer: 1.106 ± 0.497
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.106CysTyr: 1.106 ± 0.497
0.0CysXaa: 0.0 ± 0.0
Asp
1.106AspAla: 1.106 ± 0.497
1.106AspCys: 1.106 ± 0.497
4.425AspAsp: 4.425 ± 1.987
1.106AspGlu: 1.106 ± 0.497
3.319AspPhe: 3.319 ± 1.159
2.212AspGly: 2.212 ± 0.994
3.319AspHis: 3.319 ± 1.491
3.319AspIle: 3.319 ± 1.491
1.106AspLys: 1.106 ± 0.497
4.425AspLeu: 4.425 ± 0.662
0.0AspMet: 0.0 ± 0.0
1.106AspAsn: 1.106 ± 0.497
1.106AspPro: 1.106 ± 0.497
2.212AspGln: 2.212 ± 1.656
3.319AspArg: 3.319 ± 1.491
3.319AspSer: 3.319 ± 1.491
0.0AspThr: 0.0 ± 0.0
3.319AspVal: 3.319 ± 1.159
1.106AspTrp: 1.106 ± 0.497
3.319AspTyr: 3.319 ± 1.159
0.0AspXaa: 0.0 ± 0.0
Glu
4.425GluAla: 4.425 ± 0.662
0.0GluCys: 0.0 ± 0.0
3.319GluAsp: 3.319 ± 1.491
4.425GluGlu: 4.425 ± 1.987
2.212GluPhe: 2.212 ± 0.994
0.0GluGly: 0.0 ± 0.0
1.106GluHis: 1.106 ± 0.497
1.106GluIle: 1.106 ± 0.497
5.531GluLys: 5.531 ± 0.166
3.319GluLeu: 3.319 ± 1.491
0.0GluMet: 0.0 ± 0.0
1.106GluAsn: 1.106 ± 0.497
0.0GluPro: 0.0 ± 0.0
0.0GluGln: 0.0 ± 0.0
1.106GluArg: 1.106 ± 2.153
5.531GluSer: 5.531 ± 2.484
2.212GluThr: 2.212 ± 0.994
5.531GluVal: 5.531 ± 2.484
0.0GluTrp: 0.0 ± 0.0
1.106GluTyr: 1.106 ± 0.497
0.0GluXaa: 0.0 ± 0.0
Phe
4.425PheAla: 4.425 ± 0.662
1.106PheCys: 1.106 ± 2.153
2.212PheAsp: 2.212 ± 0.994
2.212PheGlu: 2.212 ± 0.994
2.212PhePhe: 2.212 ± 1.656
2.212PheGly: 2.212 ± 0.994
0.0PheHis: 0.0 ± 0.0
7.743PheIle: 7.743 ± 9.772
5.531PheLys: 5.531 ± 0.166
7.743PheLeu: 7.743 ± 1.822
1.106PheMet: 1.106 ± 0.497
2.212PheAsn: 2.212 ± 1.656
3.319PhePro: 3.319 ± 1.159
0.0PheGln: 0.0 ± 0.0
3.319PheArg: 3.319 ± 1.491
3.319PheSer: 3.319 ± 6.459
2.212PheThr: 2.212 ± 0.994
0.0PheVal: 0.0 ± 0.0
2.212PheTrp: 2.212 ± 1.656
1.106PheTyr: 1.106 ± 0.497
0.0PheXaa: 0.0 ± 0.0
Gly
3.319GlyAla: 3.319 ± 1.159
0.0GlyCys: 0.0 ± 0.0
4.425GlyAsp: 4.425 ± 1.987
0.0GlyGlu: 0.0 ± 0.0
3.319GlyPhe: 3.319 ± 1.159
5.531GlyGly: 5.531 ± 2.484
2.212GlyHis: 2.212 ± 0.994
2.212GlyIle: 2.212 ± 0.994
6.637GlyLys: 6.637 ± 2.981
6.637GlyLeu: 6.637 ± 4.969
0.0GlyMet: 0.0 ± 0.0
0.0GlyAsn: 0.0 ± 0.0
2.212GlyPro: 2.212 ± 1.656
1.106GlyGln: 1.106 ± 0.497
1.106GlyArg: 1.106 ± 0.497
4.425GlySer: 4.425 ± 1.987
8.85GlyThr: 8.85 ± 1.325
3.319GlyVal: 3.319 ± 1.491
1.106GlyTrp: 1.106 ± 0.497
1.106GlyTyr: 1.106 ± 0.497
0.0GlyXaa: 0.0 ± 0.0
His
1.106HisAla: 1.106 ± 0.497
0.0HisCys: 0.0 ± 0.0
1.106HisAsp: 1.106 ± 0.497
1.106HisGlu: 1.106 ± 0.497
1.106HisPhe: 1.106 ± 0.497
1.106HisGly: 1.106 ± 2.153
0.0HisHis: 0.0 ± 0.0
1.106HisIle: 1.106 ± 0.497
1.106HisLys: 1.106 ± 0.497
3.319HisLeu: 3.319 ± 1.491
0.0HisMet: 0.0 ± 0.0
1.106HisAsn: 1.106 ± 0.497
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
3.319HisArg: 3.319 ± 1.491
1.106HisSer: 1.106 ± 0.497
0.0HisThr: 0.0 ± 0.0
3.319HisVal: 3.319 ± 1.491
1.106HisTrp: 1.106 ± 0.497
2.212HisTyr: 2.212 ± 1.656
0.0HisXaa: 0.0 ± 0.0
Ile
4.425IleAla: 4.425 ± 3.312
1.106IleCys: 1.106 ± 2.153
3.319IleAsp: 3.319 ± 1.159
3.319IleGlu: 3.319 ± 1.491
4.425IlePhe: 4.425 ± 8.612
4.425IleGly: 4.425 ± 1.987
1.106IleHis: 1.106 ± 0.497
4.425IleIle: 4.425 ± 8.612
2.212IleLys: 2.212 ± 0.994
2.212IleLeu: 2.212 ± 1.656
2.212IleMet: 2.212 ± 0.719
1.106IleAsn: 1.106 ± 0.497
1.106IlePro: 1.106 ± 0.497
4.425IleGln: 4.425 ± 0.662
3.319IleArg: 3.319 ± 1.159
6.637IleSer: 6.637 ± 2.319
1.106IleThr: 1.106 ± 0.497
4.425IleVal: 4.425 ± 3.312
0.0IleTrp: 0.0 ± 0.0
3.319IleTyr: 3.319 ± 1.491
0.0IleXaa: 0.0 ± 0.0
Lys
2.212LysAla: 2.212 ± 0.994
0.0LysCys: 0.0 ± 0.0
4.425LysAsp: 4.425 ± 1.987
1.106LysGlu: 1.106 ± 0.497
5.531LysPhe: 5.531 ± 2.816
2.212LysGly: 2.212 ± 0.994
3.319LysHis: 3.319 ± 1.491
4.425LysIle: 4.425 ± 1.987
4.425LysLys: 4.425 ± 1.987
4.425LysLeu: 4.425 ± 1.987
5.531LysMet: 5.531 ± 2.484
1.106LysAsn: 1.106 ± 0.497
2.212LysPro: 2.212 ± 0.994
1.106LysGln: 1.106 ± 0.497
2.212LysArg: 2.212 ± 0.994
7.743LysSer: 7.743 ± 0.828
0.0LysThr: 0.0 ± 0.0
3.319LysVal: 3.319 ± 1.491
4.425LysTrp: 4.425 ± 0.662
3.319LysTyr: 3.319 ± 1.159
0.0LysXaa: 0.0 ± 0.0
Leu
8.85LeuAla: 8.85 ± 1.325
1.106LeuCys: 1.106 ± 0.497
2.212LeuAsp: 2.212 ± 0.994
5.531LeuGlu: 5.531 ± 0.166
4.425LeuPhe: 4.425 ± 0.662
7.743LeuGly: 7.743 ± 1.822
2.212LeuHis: 2.212 ± 1.656
6.637LeuIle: 6.637 ± 10.269
3.319LeuLys: 3.319 ± 1.491
11.062LeuLeu: 11.062 ± 5.631
4.425LeuMet: 4.425 ± 0.662
4.425LeuAsn: 4.425 ± 0.662
9.956LeuPro: 9.956 ± 4.472
3.319LeuGln: 3.319 ± 3.809
11.062LeuArg: 11.062 ± 5.631
6.637LeuSer: 6.637 ± 0.331
7.743LeuThr: 7.743 ± 3.478
6.637LeuVal: 6.637 ± 0.331
1.106LeuTrp: 1.106 ± 2.153
2.212LeuTyr: 2.212 ± 0.994
0.0LeuXaa: 0.0 ± 0.0
Met
2.212MetAla: 2.212 ± 0.994
0.0MetCys: 0.0 ± 0.0
2.212MetAsp: 2.212 ± 1.656
1.106MetGlu: 1.106 ± 0.497
2.212MetPhe: 2.212 ± 1.656
2.212MetGly: 2.212 ± 0.994
1.106MetHis: 1.106 ± 0.497
0.0MetIle: 0.0 ± 0.0
2.212MetLys: 2.212 ± 0.994
3.319MetLeu: 3.319 ± 1.159
0.0MetMet: 0.0 ± 0.0
1.106MetAsn: 1.106 ± 0.497
1.106MetPro: 1.106 ± 0.497
1.106MetGln: 1.106 ± 0.497
0.0MetArg: 0.0 ± 0.0
1.106MetSer: 1.106 ± 2.153
3.319MetThr: 3.319 ± 1.491
2.212MetVal: 2.212 ± 0.994
3.319MetTrp: 3.319 ± 6.459
1.106MetTyr: 1.106 ± 0.497
0.0MetXaa: 0.0 ± 0.0
Asn
3.319AsnAla: 3.319 ± 1.491
0.0AsnCys: 0.0 ± 0.0
2.212AsnAsp: 2.212 ± 0.994
1.106AsnGlu: 1.106 ± 0.497
1.106AsnPhe: 1.106 ± 0.497
2.212AsnGly: 2.212 ± 0.994
1.106AsnHis: 1.106 ± 0.497
3.319AsnIle: 3.319 ± 3.809
1.106AsnLys: 1.106 ± 0.497
2.212AsnLeu: 2.212 ± 0.994
0.0AsnMet: 0.0 ± 0.0
1.106AsnAsn: 1.106 ± 0.497
3.319AsnPro: 3.319 ± 1.491
1.106AsnGln: 1.106 ± 0.497
0.0AsnArg: 0.0 ± 0.0
3.319AsnSer: 3.319 ± 1.491
3.319AsnThr: 3.319 ± 1.491
3.319AsnVal: 3.319 ± 1.159
0.0AsnTrp: 0.0 ± 0.0
1.106AsnTyr: 1.106 ± 0.497
0.0AsnXaa: 0.0 ± 0.0
Pro
3.319ProAla: 3.319 ± 3.809
0.0ProCys: 0.0 ± 0.0
1.106ProAsp: 1.106 ± 0.497
3.319ProGlu: 3.319 ± 1.159
2.212ProPhe: 2.212 ± 0.994
0.0ProGly: 0.0 ± 0.0
0.0ProHis: 0.0 ± 0.0
5.531ProIle: 5.531 ± 0.166
3.319ProLys: 3.319 ± 1.491
2.212ProLeu: 2.212 ± 1.656
1.106ProMet: 1.106 ± 0.497
3.319ProAsn: 3.319 ± 1.491
3.319ProPro: 3.319 ± 1.159
1.106ProGln: 1.106 ± 0.497
3.319ProArg: 3.319 ± 1.491
5.531ProSer: 5.531 ± 2.484
2.212ProThr: 2.212 ± 0.994
6.637ProVal: 6.637 ± 2.981
3.319ProTrp: 3.319 ± 1.159
1.106ProTyr: 1.106 ± 0.497
0.0ProXaa: 0.0 ± 0.0
Gln
1.106GlnAla: 1.106 ± 2.153
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
2.212GlnGlu: 2.212 ± 0.994
2.212GlnPhe: 2.212 ± 1.656
1.106GlnGly: 1.106 ± 2.153
0.0GlnHis: 0.0 ± 0.0
2.212GlnIle: 2.212 ± 0.994
0.0GlnLys: 0.0 ± 0.0
6.637GlnLeu: 6.637 ± 2.319
2.212GlnMet: 2.212 ± 1.656
3.319GlnAsn: 3.319 ± 1.491
0.0GlnPro: 0.0 ± 0.0
2.212GlnGln: 2.212 ± 0.994
1.106GlnArg: 1.106 ± 0.497
4.425GlnSer: 4.425 ± 0.662
1.106GlnThr: 1.106 ± 0.497
3.319GlnVal: 3.319 ± 1.491
2.212GlnTrp: 2.212 ± 0.994
2.212GlnTyr: 2.212 ± 0.994
0.0GlnXaa: 0.0 ± 0.0
Arg
4.425ArgAla: 4.425 ± 0.662
0.0ArgCys: 0.0 ± 0.0
1.106ArgAsp: 1.106 ± 2.153
3.319ArgGlu: 3.319 ± 1.491
1.106ArgPhe: 1.106 ± 0.497
2.212ArgGly: 2.212 ± 0.994
1.106ArgHis: 1.106 ± 0.497
1.106ArgIle: 1.106 ± 0.497
8.85ArgLys: 8.85 ± 1.325
3.319ArgLeu: 3.319 ± 1.491
3.319ArgMet: 3.319 ± 1.491
3.319ArgAsn: 3.319 ± 1.491
3.319ArgPro: 3.319 ± 1.159
2.212ArgGln: 2.212 ± 4.306
3.319ArgArg: 3.319 ± 1.159
5.531ArgSer: 5.531 ± 0.166
2.212ArgThr: 2.212 ± 0.994
1.106ArgVal: 1.106 ± 0.497
2.212ArgTrp: 2.212 ± 0.994
1.106ArgTyr: 1.106 ± 0.497
0.0ArgXaa: 0.0 ± 0.0
Ser
6.637SerAla: 6.637 ± 2.981
2.212SerCys: 2.212 ± 0.994
3.319SerAsp: 3.319 ± 1.491
1.106SerGlu: 1.106 ± 0.497
2.212SerPhe: 2.212 ± 0.994
4.425SerGly: 4.425 ± 1.987
3.319SerHis: 3.319 ± 1.159
5.531SerIle: 5.531 ± 0.166
4.425SerLys: 4.425 ± 0.662
12.168SerLeu: 12.168 ± 7.784
3.319SerMet: 3.319 ± 1.159
2.212SerAsn: 2.212 ± 1.656
5.531SerPro: 5.531 ± 2.816
5.531SerGln: 5.531 ± 2.484
5.531SerArg: 5.531 ± 0.166
5.531SerSer: 5.531 ± 2.484
3.319SerThr: 3.319 ± 1.491
3.319SerVal: 3.319 ± 1.159
1.106SerTrp: 1.106 ± 0.497
5.531SerTyr: 5.531 ± 0.166
0.0SerXaa: 0.0 ± 0.0
Thr
4.425ThrAla: 4.425 ± 1.987
0.0ThrCys: 0.0 ± 0.0
0.0ThrAsp: 0.0 ± 0.0
1.106ThrGlu: 1.106 ± 0.497
2.212ThrPhe: 2.212 ± 1.656
8.85ThrGly: 8.85 ± 1.325
1.106ThrHis: 1.106 ± 0.497
2.212ThrIle: 2.212 ± 0.994
4.425ThrLys: 4.425 ± 1.987
9.956ThrLeu: 9.956 ± 4.472
0.0ThrMet: 0.0 ± 0.0
3.319ThrAsn: 3.319 ± 1.491
4.425ThrPro: 4.425 ± 1.987
0.0ThrGln: 0.0 ± 0.0
0.0ThrArg: 0.0 ± 0.0
3.319ThrSer: 3.319 ± 1.159
0.0ThrThr: 0.0 ± 0.0
2.212ThrVal: 2.212 ± 0.994
0.0ThrTrp: 0.0 ± 0.0
1.106ThrTyr: 1.106 ± 0.497
0.0ThrXaa: 0.0 ± 0.0
Val
3.319ValAla: 3.319 ± 1.491
0.0ValCys: 0.0 ± 0.0
1.106ValAsp: 1.106 ± 0.497
3.319ValGlu: 3.319 ± 1.491
3.319ValPhe: 3.319 ± 1.159
2.212ValGly: 2.212 ± 0.994
0.0ValHis: 0.0 ± 0.0
2.212ValIle: 2.212 ± 0.994
4.425ValLys: 4.425 ± 1.987
6.637ValLeu: 6.637 ± 2.319
1.106ValMet: 1.106 ± 2.153
1.106ValAsn: 1.106 ± 0.497
3.319ValPro: 3.319 ± 1.491
5.531ValGln: 5.531 ± 2.484
2.212ValArg: 2.212 ± 0.994
6.637ValSer: 6.637 ± 2.981
3.319ValThr: 3.319 ± 1.159
1.106ValVal: 1.106 ± 0.497
3.319ValTrp: 3.319 ± 1.491
2.212ValTyr: 2.212 ± 1.656
0.0ValXaa: 0.0 ± 0.0
Trp
2.212TrpAla: 2.212 ± 4.306
0.0TrpCys: 0.0 ± 0.0
2.212TrpAsp: 2.212 ± 0.994
1.106TrpGlu: 1.106 ± 0.497
0.0TrpPhe: 0.0 ± 0.0
1.106TrpGly: 1.106 ± 2.153
0.0TrpHis: 0.0 ± 0.0
1.106TrpIle: 1.106 ± 0.497
1.106TrpLys: 1.106 ± 0.497
5.531TrpLeu: 5.531 ± 0.166
1.106TrpMet: 1.106 ± 1.944
0.0TrpAsn: 0.0 ± 0.0
2.212TrpPro: 2.212 ± 1.656
0.0TrpGln: 0.0 ± 0.0
1.106TrpArg: 1.106 ± 0.497
3.319TrpSer: 3.319 ± 3.809
2.212TrpThr: 2.212 ± 0.994
1.106TrpVal: 1.106 ± 0.497
1.106TrpTrp: 1.106 ± 0.497
2.212TrpTyr: 2.212 ± 0.994
0.0TrpXaa: 0.0 ± 0.0
Tyr
6.637TyrAla: 6.637 ± 2.981
0.0TyrCys: 0.0 ± 0.0
2.212TyrAsp: 2.212 ± 0.994
3.319TyrGlu: 3.319 ± 1.159
4.425TyrPhe: 4.425 ± 0.662
4.425TyrGly: 4.425 ± 0.662
0.0TyrHis: 0.0 ± 0.0
1.106TyrIle: 1.106 ± 0.497
0.0TyrLys: 0.0 ± 0.0
3.319TyrLeu: 3.319 ± 1.491
0.0TyrMet: 0.0 ± 0.0
1.106TyrAsn: 1.106 ± 0.497
2.212TyrPro: 2.212 ± 0.994
1.106TyrGln: 1.106 ± 0.497
2.212TyrArg: 2.212 ± 0.994
2.212TyrSer: 2.212 ± 1.656
2.212TyrThr: 2.212 ± 0.994
1.106TyrVal: 1.106 ± 0.497
1.106TyrTrp: 1.106 ± 2.153
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (905 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski