Yacon necrotic mottle virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus

Average proteome isoelectric point is 7.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C4MZL5|A0A0C4MZL5_9VIRU ORF4 OS=Yacon necrotic mottle virus OX=1561150 PE=4 SV=1
MM1 pKa = 8.04ADD3 pKa = 3.63RR4 pKa = 11.84FEE6 pKa = 5.28KK7 pKa = 10.56SIKK10 pKa = 9.86DD11 pKa = 3.56WYY13 pKa = 10.43DD14 pKa = 2.96HH15 pKa = 6.26SQTSNLEE22 pKa = 4.15FINPLKK28 pKa = 10.65NQNQSISEE36 pKa = 4.21LEE38 pKa = 4.06NNISCIFDD46 pKa = 3.7RR47 pKa = 11.84LSLFAKK53 pKa = 10.28ISIKK57 pKa = 10.46NFHH60 pKa = 6.94KK61 pKa = 10.41IISHH65 pKa = 6.51LEE67 pKa = 3.89SLEE70 pKa = 3.87KK71 pKa = 10.47RR72 pKa = 11.84LEE74 pKa = 4.05KK75 pKa = 10.94CEE77 pKa = 3.9EE78 pKa = 4.11IQRR81 pKa = 11.84KK82 pKa = 4.87TQSEE86 pKa = 4.08IRR88 pKa = 11.84KK89 pKa = 9.09DD90 pKa = 3.45LQQISSEE97 pKa = 4.0IHH99 pKa = 5.42KK100 pKa = 10.44SKK102 pKa = 10.48PLTEE106 pKa = 4.15KK107 pKa = 10.6QVLSLVNEE115 pKa = 4.69IAQQPKK121 pKa = 10.21LVEE124 pKa = 4.08EE125 pKa = 3.94QALRR129 pKa = 11.84LTEE132 pKa = 4.36DD133 pKa = 4.08LNSKK137 pKa = 6.75VQKK140 pKa = 10.69VEE142 pKa = 4.05EE143 pKa = 4.33LLHH146 pKa = 5.5EE147 pKa = 4.46VKK149 pKa = 10.88GLIIGG154 pKa = 3.93

Molecular weight: 17.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C4MZQ9|A0A0C4MZQ9_9VIRU Reverse transcriptase OS=Yacon necrotic mottle virus OX=1561150 PE=4 SV=1
MM1 pKa = 7.11YY2 pKa = 7.96RR3 pKa = 11.84TRR5 pKa = 11.84DD6 pKa = 3.37RR7 pKa = 11.84SPGEE11 pKa = 4.08GSSSDD16 pKa = 3.04GGNIRR21 pKa = 11.84RR22 pKa = 11.84KK23 pKa = 10.36CEE25 pKa = 3.62VKK27 pKa = 10.36QRR29 pKa = 11.84EE30 pKa = 3.66EE31 pKa = 3.43WLRR34 pKa = 11.84RR35 pKa = 11.84NNPDD39 pKa = 3.1FQLLPKK45 pKa = 9.84IYY47 pKa = 9.83RR48 pKa = 11.84GQFSFEE54 pKa = 4.17EE55 pKa = 4.32PGALYY60 pKa = 10.09RR61 pKa = 11.84HH62 pKa = 5.06YY63 pKa = 10.47QIRR66 pKa = 11.84ANTTPIRR73 pKa = 11.84LEE75 pKa = 3.77EE76 pKa = 3.95SSIYY80 pKa = 10.82AGVAQQYY87 pKa = 8.65EE88 pKa = 4.21RR89 pKa = 11.84EE90 pKa = 4.14AAKK93 pKa = 10.44QAVRR97 pKa = 11.84TMRR100 pKa = 11.84HH101 pKa = 4.93LQAVLDD107 pKa = 5.42FKK109 pKa = 11.58AQVCLAKK116 pKa = 10.65SSADD120 pKa = 3.94NYY122 pKa = 10.39WGDD125 pKa = 2.86HH126 pKa = 5.13WPNVKK131 pKa = 9.96KK132 pKa = 10.64QNQQARR138 pKa = 11.84KK139 pKa = 9.21LLSEE143 pKa = 4.7LEE145 pKa = 4.14ALCIEE150 pKa = 5.15LGQVPII156 pKa = 4.55

Molecular weight: 18.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

2484

143

2031

621.0

71.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.354 ± 0.714

1.812 ± 0.387

5.193 ± 0.689

9.138 ± 0.867

2.858 ± 0.154

5.113 ± 0.876

1.973 ± 0.347

7.528 ± 0.669

8.333 ± 0.892

8.011 ± 1.461

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.295 ± 0.686

4.831 ± 0.283

4.791 ± 0.644

5.475 ± 0.835

6.24 ± 0.734

6.562 ± 0.942

5.274 ± 0.841

4.147 ± 0.374

1.49 ± 0.355

3.341 ± 0.531
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski