Rodent associated circovirus 5

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus

Average proteome isoelectric point is 7.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H4MX91|A0A2H4MX91_9CIRC Replication-associated protein OS=Rodent associated circovirus 5 OX=2560712 PE=4 SV=1
MM1 pKa = 7.39FKK3 pKa = 10.87GGVVGNAKK11 pKa = 10.09NDD13 pKa = 3.62YY14 pKa = 10.88NILQVKK20 pKa = 9.13KK21 pKa = 10.66LSGLARR27 pKa = 11.84THH29 pKa = 7.0LEE31 pKa = 3.88PALGSPEE38 pKa = 3.94QASEE42 pKa = 4.22YY43 pKa = 9.0CQKK46 pKa = 11.07DD47 pKa = 2.8GDD49 pKa = 4.3YY50 pKa = 11.01IEE52 pKa = 4.84FGQRR56 pKa = 11.84GKK58 pKa = 10.27QGKK61 pKa = 7.83RR62 pKa = 11.84TDD64 pKa = 3.49LDD66 pKa = 3.45QAVSVLRR73 pKa = 11.84EE74 pKa = 4.09SNGDD78 pKa = 3.38LRR80 pKa = 11.84QLAEE84 pKa = 4.33TCPVAYY90 pKa = 10.21LKK92 pKa = 10.97YY93 pKa = 10.53SSGFQKK99 pKa = 10.86LCDD102 pKa = 3.61VMQWGQNRR110 pKa = 11.84DD111 pKa = 3.38FKK113 pKa = 11.0TKK115 pKa = 10.43VIVLIGPPGCGKK127 pKa = 8.16TRR129 pKa = 11.84QVLGSVGGDD138 pKa = 3.19LSKK141 pKa = 11.31VYY143 pKa = 9.75FKK145 pKa = 10.97PRR147 pKa = 11.84GPWWDD152 pKa = 3.77GYY154 pKa = 9.95VGQVVTCLDD163 pKa = 4.38DD164 pKa = 4.03FYY166 pKa = 11.81GWIPYY171 pKa = 10.23DD172 pKa = 3.5EE173 pKa = 4.85LLRR176 pKa = 11.84VCDD179 pKa = 4.69RR180 pKa = 11.84YY181 pKa = 10.11PLKK184 pKa = 11.17VPIKK188 pKa = 9.1GSFVNFVSRR197 pKa = 11.84TIYY200 pKa = 8.85ITSNVPPEE208 pKa = 3.76EE209 pKa = 4.22WYY211 pKa = 10.68SRR213 pKa = 11.84EE214 pKa = 3.95NFRR217 pKa = 11.84GRR219 pKa = 11.84YY220 pKa = 6.5EE221 pKa = 3.94AFFRR225 pKa = 11.84RR226 pKa = 11.84IDD228 pKa = 3.73EE229 pKa = 4.13YY230 pKa = 10.88LTWSEE235 pKa = 4.18EE236 pKa = 4.15SGQFASGNPAYY247 pKa = 10.24RR248 pKa = 11.84ISYY251 pKa = 9.47

Molecular weight: 28.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H4MX91|A0A2H4MX91_9CIRC Replication-associated protein OS=Rodent associated circovirus 5 OX=2560712 PE=4 SV=1
MM1 pKa = 7.39FKK3 pKa = 10.87GGVVGNAKK11 pKa = 10.09NDD13 pKa = 3.62YY14 pKa = 10.88NILQVKK20 pKa = 9.13KK21 pKa = 10.66LSGLARR27 pKa = 11.84THH29 pKa = 7.0LEE31 pKa = 3.88PALGSPEE38 pKa = 3.94QASEE42 pKa = 4.22YY43 pKa = 9.0CQKK46 pKa = 11.07DD47 pKa = 2.8GDD49 pKa = 4.3YY50 pKa = 11.01IEE52 pKa = 4.84FGQRR56 pKa = 11.84GKK58 pKa = 10.27QGKK61 pKa = 7.83RR62 pKa = 11.84TDD64 pKa = 3.49LDD66 pKa = 3.45QAVSVLRR73 pKa = 11.84EE74 pKa = 4.09SNGDD78 pKa = 3.38LRR80 pKa = 11.84QLAEE84 pKa = 4.33TCPVAYY90 pKa = 10.21LKK92 pKa = 10.97YY93 pKa = 10.53SSGFQKK99 pKa = 10.86LCDD102 pKa = 3.61VMQWGQNRR110 pKa = 11.84DD111 pKa = 3.38FKK113 pKa = 11.0TKK115 pKa = 10.43VIVLIGPPGCGKK127 pKa = 8.16TRR129 pKa = 11.84QVLGSVGGDD138 pKa = 3.19LSKK141 pKa = 11.31VYY143 pKa = 9.75FKK145 pKa = 10.97PRR147 pKa = 11.84GPWWDD152 pKa = 3.77GYY154 pKa = 9.95VGQVVTCLDD163 pKa = 4.38DD164 pKa = 4.03FYY166 pKa = 11.81GWIPYY171 pKa = 10.23DD172 pKa = 3.5EE173 pKa = 4.85LLRR176 pKa = 11.84VCDD179 pKa = 4.69RR180 pKa = 11.84YY181 pKa = 10.11PLKK184 pKa = 11.17VPIKK188 pKa = 9.1GSFVNFVSRR197 pKa = 11.84TIYY200 pKa = 8.85ITSNVPPEE208 pKa = 3.76EE209 pKa = 4.22WYY211 pKa = 10.68SRR213 pKa = 11.84EE214 pKa = 3.95NFRR217 pKa = 11.84GRR219 pKa = 11.84YY220 pKa = 6.5EE221 pKa = 3.94AFFRR225 pKa = 11.84RR226 pKa = 11.84IDD228 pKa = 3.73EE229 pKa = 4.13YY230 pKa = 10.88LTWSEE235 pKa = 4.18EE236 pKa = 4.15SGQFASGNPAYY247 pKa = 10.24RR248 pKa = 11.84ISYY251 pKa = 9.47

Molecular weight: 28.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

251

251

251

251.0

28.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.984 ± 0.0

2.39 ± 0.0

5.976 ± 0.0

5.578 ± 0.0

4.781 ± 0.0

10.359 ± 0.0

0.398 ± 0.0

3.984 ± 0.0

6.375 ± 0.0

7.57 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

0.797 ± 0.0

3.586 ± 0.0

5.179 ± 0.0

5.179 ± 0.0

6.773 ± 0.0

6.773 ± 0.0

3.586 ± 0.0

7.968 ± 0.0

2.39 ± 0.0

6.375 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski