Tursiops truncatus papillomavirus 6

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Omikronpapillomavirus; Omikronpapillomavirus 1

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H6UYQ1|H6UYQ1_PSPV Major capsid protein L1 OS=Tursiops truncatus papillomavirus 6 OX=1144382 GN=L1 PE=3 SV=1
MM1 pKa = 7.23VRR3 pKa = 11.84ATRR6 pKa = 11.84KK7 pKa = 9.58KK8 pKa = 10.11RR9 pKa = 11.84AGEE12 pKa = 3.56QDD14 pKa = 3.88LYY16 pKa = 10.88SGCRR20 pKa = 11.84RR21 pKa = 11.84GQDD24 pKa = 3.32CPDD27 pKa = 4.55DD28 pKa = 3.53IKK30 pKa = 11.62AKK32 pKa = 10.59FEE34 pKa = 3.83QDD36 pKa = 2.48TWADD40 pKa = 3.94RR41 pKa = 11.84LLKK44 pKa = 9.76WFSSFVYY51 pKa = 10.27FGNLGISTGRR61 pKa = 11.84GTGGPSGYY69 pKa = 10.38VPVGSGGRR77 pKa = 11.84GGRR80 pKa = 11.84PAMGGQPSRR89 pKa = 11.84PSLVVEE95 pKa = 4.03NVGPGDD101 pKa = 3.62IPLGGTVDD109 pKa = 3.8ASAPSVITPSEE120 pKa = 4.09STVVVEE126 pKa = 4.95GATTTTEE133 pKa = 4.31EE134 pKa = 4.1IPLVPLHH141 pKa = 7.04PDD143 pKa = 3.39VGPLQPEE150 pKa = 4.4TNIHH154 pKa = 5.25VVPPPEE160 pKa = 5.42AGGPAVLDD168 pKa = 3.44VTSNVTSTYY177 pKa = 9.82PHH179 pKa = 7.48DD180 pKa = 4.34PSIIHH185 pKa = 6.98PGHH188 pKa = 6.4TLLSTYY194 pKa = 10.16INPVFEE200 pKa = 5.79DD201 pKa = 3.76PLFPTVSLQPLDD213 pKa = 3.48TSLIPGEE220 pKa = 4.48TSFPPHH226 pKa = 5.34TVVNLSGTFEE236 pKa = 5.34DD237 pKa = 4.89IEE239 pKa = 5.58LDD241 pKa = 3.82VLDD244 pKa = 5.17GSSKK248 pKa = 10.0LTDD251 pKa = 4.15PKK253 pKa = 10.6TSTPVSRR260 pKa = 11.84VDD262 pKa = 4.48SGLQSIRR269 pKa = 11.84RR270 pKa = 11.84AYY272 pKa = 8.0TRR274 pKa = 11.84RR275 pKa = 11.84ANVLRR280 pKa = 11.84KK281 pKa = 9.39YY282 pKa = 10.48YY283 pKa = 10.95NRR285 pKa = 11.84FTQQVRR291 pKa = 11.84VQKK294 pKa = 10.67PEE296 pKa = 4.27FLTQPSKK303 pKa = 10.91LISYY307 pKa = 7.74EE308 pKa = 3.82FTNQAFDD315 pKa = 4.52PDD317 pKa = 3.79TTLQFPQPADD327 pKa = 3.52EE328 pKa = 4.82VVYY331 pKa = 10.96APDD334 pKa = 4.59NDD336 pKa = 3.93FQDD339 pKa = 3.2VGTLHH344 pKa = 6.75RR345 pKa = 11.84PIYY348 pKa = 9.73SLEE351 pKa = 4.3GGHH354 pKa = 5.9VRR356 pKa = 11.84VSRR359 pKa = 11.84FGVRR363 pKa = 11.84EE364 pKa = 4.06TIRR367 pKa = 11.84TRR369 pKa = 11.84VGTTIGARR377 pKa = 11.84VHH379 pKa = 6.77FFTDD383 pKa = 2.91VSTISNISDD392 pKa = 3.33TFGFTSTLGPDD403 pKa = 3.17VGDD406 pKa = 4.18PGIEE410 pKa = 3.52LHH412 pKa = 7.02LFGEE416 pKa = 4.86STGDD420 pKa = 3.3TSIADD425 pKa = 3.65AQGGGVFLQNGTLQSEE441 pKa = 4.67TQFTDD446 pKa = 3.24VVNGSLQSEE455 pKa = 4.83YY456 pKa = 10.69SDD458 pKa = 4.81SMLLDD463 pKa = 4.12SYY465 pKa = 11.94SEE467 pKa = 4.39TFDD470 pKa = 3.61TAHH473 pKa = 7.33LALLNSNSSSQVLSIPEE490 pKa = 3.94LARR493 pKa = 11.84PFRR496 pKa = 11.84GPAEE500 pKa = 4.38STGGLAVAYY509 pKa = 8.89PVDD512 pKa = 3.75SSLDD516 pKa = 3.36VAAPSTPFIHH526 pKa = 6.43NVPTPPFVVLHH537 pKa = 5.85FSGGGTSFFLHH548 pKa = 6.86PSLLRR553 pKa = 11.84LRR555 pKa = 11.84RR556 pKa = 11.84KK557 pKa = 9.6RR558 pKa = 11.84VFYY561 pKa = 11.01

Molecular weight: 60.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H6UYQ2|H6UYQ2_PSPV L3 OS=Tursiops truncatus papillomavirus 6 OX=1144382 GN=L3 PE=4 SV=1
MM1 pKa = 8.06EE2 pKa = 4.64IRR4 pKa = 11.84MITTYY9 pKa = 10.68LQQTAKK15 pKa = 9.97KK16 pKa = 8.02WPHH19 pKa = 6.13SFTLQLLVGLLLVVMVSYY37 pKa = 9.17LTGHH41 pKa = 6.27IGFRR45 pKa = 11.84LPRR48 pKa = 11.84VKK50 pKa = 10.04TMAYY54 pKa = 9.27AGEE57 pKa = 4.31MKK59 pKa = 10.37CLSLWLIILEE69 pKa = 4.33TQISLFQLKK78 pKa = 7.79THH80 pKa = 6.9LSMHH84 pKa = 6.58LKK86 pKa = 10.49VPLLQKK92 pKa = 9.33TSKK95 pKa = 8.67FTQGIWRR102 pKa = 11.84NINLISFFSFAKK114 pKa = 10.59SPP116 pKa = 3.37

Molecular weight: 13.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2572

116

642

367.4

40.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.599 ± 0.488

2.216 ± 0.606

5.91 ± 0.639

5.638 ± 0.524

4.471 ± 0.314

6.882 ± 0.74

2.449 ± 0.456

4.199 ± 0.353

5.482 ± 0.881

8.709 ± 0.646

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.75 ± 0.365

3.849 ± 0.402

6.493 ± 0.831

4.355 ± 0.619

4.938 ± 0.243

8.981 ± 0.504

6.843 ± 0.754

6.61 ± 0.66

1.711 ± 0.344

2.916 ± 0.235
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski