Amino acid dipepetide frequency for Wenling picorna-like virus 9

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.408AlaAla: 6.408 ± 0.0
1.131AlaCys: 1.131 ± 0.0
4.523AlaAsp: 4.523 ± 0.0
5.654AlaGlu: 5.654 ± 0.0
2.262AlaPhe: 2.262 ± 0.0
7.539AlaGly: 7.539 ± 0.0
1.131AlaHis: 1.131 ± 0.0
4.146AlaIle: 4.146 ± 0.0
3.015AlaLys: 3.015 ± 0.0
7.539AlaLeu: 7.539 ± 0.0
1.131AlaMet: 1.131 ± 0.0
2.262AlaAsn: 2.262 ± 0.0
3.015AlaPro: 3.015 ± 0.0
4.523AlaGln: 4.523 ± 0.0
3.769AlaArg: 3.769 ± 0.0
4.9AlaSer: 4.9 ± 0.0
5.277AlaThr: 5.277 ± 0.0
3.769AlaVal: 3.769 ± 0.0
1.131AlaTrp: 1.131 ± 0.0
2.262AlaTyr: 2.262 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.754CysAla: 0.754 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.131CysAsp: 1.131 ± 0.0
0.377CysGlu: 0.377 ± 0.0
0.754CysPhe: 0.754 ± 0.0
0.754CysGly: 0.754 ± 0.0
0.0CysHis: 0.0 ± 0.0
1.508CysIle: 1.508 ± 0.0
0.754CysLys: 0.754 ± 0.0
1.508CysLeu: 1.508 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.754CysAsn: 0.754 ± 0.0
1.885CysPro: 1.885 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.754CysSer: 0.754 ± 0.0
0.754CysThr: 0.754 ± 0.0
0.377CysVal: 0.377 ± 0.0
0.754CysTrp: 0.754 ± 0.0
1.508CysTyr: 1.508 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
6.408AspAla: 6.408 ± 0.0
1.508AspCys: 1.508 ± 0.0
4.9AspAsp: 4.9 ± 0.0
5.277AspGlu: 5.277 ± 0.0
2.639AspPhe: 2.639 ± 0.0
5.277AspGly: 5.277 ± 0.0
1.131AspHis: 1.131 ± 0.0
3.015AspIle: 3.015 ± 0.0
4.523AspLys: 4.523 ± 0.0
6.408AspLeu: 6.408 ± 0.0
2.262AspMet: 2.262 ± 0.0
2.262AspAsn: 2.262 ± 0.0
1.885AspPro: 1.885 ± 0.0
1.508AspGln: 1.508 ± 0.0
2.639AspArg: 2.639 ± 0.0
4.523AspSer: 4.523 ± 0.0
4.9AspThr: 4.9 ± 0.0
4.146AspVal: 4.146 ± 0.0
1.885AspTrp: 1.885 ± 0.0
2.639AspTyr: 2.639 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
6.785GluAla: 6.785 ± 0.0
0.754GluCys: 0.754 ± 0.0
6.785GluAsp: 6.785 ± 0.0
4.9GluGlu: 4.9 ± 0.0
0.754GluPhe: 0.754 ± 0.0
2.639GluGly: 2.639 ± 0.0
0.754GluHis: 0.754 ± 0.0
3.769GluIle: 3.769 ± 0.0
1.508GluLys: 1.508 ± 0.0
4.523GluLeu: 4.523 ± 0.0
0.377GluMet: 0.377 ± 0.0
2.639GluAsn: 2.639 ± 0.0
1.508GluPro: 1.508 ± 0.0
0.754GluGln: 0.754 ± 0.0
2.639GluArg: 2.639 ± 0.0
3.392GluSer: 3.392 ± 0.0
5.277GluThr: 5.277 ± 0.0
4.523GluVal: 4.523 ± 0.0
1.508GluTrp: 1.508 ± 0.0
0.754GluTyr: 0.754 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.508PheAla: 1.508 ± 0.0
0.0PheCys: 0.0 ± 0.0
3.392PheAsp: 3.392 ± 0.0
2.639PheGlu: 2.639 ± 0.0
1.131PhePhe: 1.131 ± 0.0
1.885PheGly: 1.885 ± 0.0
0.754PheHis: 0.754 ± 0.0
2.262PheIle: 2.262 ± 0.0
1.508PheLys: 1.508 ± 0.0
1.131PheLeu: 1.131 ± 0.0
1.131PheMet: 1.131 ± 0.0
3.015PheAsn: 3.015 ± 0.0
1.508PhePro: 1.508 ± 0.0
1.885PheGln: 1.885 ± 0.0
2.262PheArg: 2.262 ± 0.0
1.885PheSer: 1.885 ± 0.0
3.392PheThr: 3.392 ± 0.0
1.508PheVal: 1.508 ± 0.0
1.131PheTrp: 1.131 ± 0.0
1.508PheTyr: 1.508 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.769GlyAla: 3.769 ± 0.0
1.131GlyCys: 1.131 ± 0.0
4.146GlyAsp: 4.146 ± 0.0
3.392GlyGlu: 3.392 ± 0.0
3.769GlyPhe: 3.769 ± 0.0
1.885GlyGly: 1.885 ± 0.0
1.508GlyHis: 1.508 ± 0.0
3.769GlyIle: 3.769 ± 0.0
6.031GlyLys: 6.031 ± 0.0
6.785GlyLeu: 6.785 ± 0.0
3.769GlyMet: 3.769 ± 0.0
1.885GlyAsn: 1.885 ± 0.0
3.769GlyPro: 3.769 ± 0.0
3.392GlyGln: 3.392 ± 0.0
5.277GlyArg: 5.277 ± 0.0
3.769GlySer: 3.769 ± 0.0
3.392GlyThr: 3.392 ± 0.0
7.539GlyVal: 7.539 ± 0.0
0.0GlyTrp: 0.0 ± 0.0
1.885GlyTyr: 1.885 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.262HisAla: 2.262 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.377HisAsp: 0.377 ± 0.0
1.131HisGlu: 1.131 ± 0.0
0.377HisPhe: 0.377 ± 0.0
2.262HisGly: 2.262 ± 0.0
0.377HisHis: 0.377 ± 0.0
1.131HisIle: 1.131 ± 0.0
0.754HisLys: 0.754 ± 0.0
0.377HisLeu: 0.377 ± 0.0
0.754HisMet: 0.754 ± 0.0
0.0HisAsn: 0.0 ± 0.0
1.131HisPro: 1.131 ± 0.0
0.377HisGln: 0.377 ± 0.0
1.508HisArg: 1.508 ± 0.0
0.377HisSer: 0.377 ± 0.0
2.262HisThr: 2.262 ± 0.0
1.131HisVal: 1.131 ± 0.0
0.377HisTrp: 0.377 ± 0.0
0.377HisTyr: 0.377 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.9IleAla: 4.9 ± 0.0
0.0IleCys: 0.0 ± 0.0
4.523IleAsp: 4.523 ± 0.0
3.015IleGlu: 3.015 ± 0.0
2.262IlePhe: 2.262 ± 0.0
3.769IleGly: 3.769 ± 0.0
1.885IleHis: 1.885 ± 0.0
4.523IleIle: 4.523 ± 0.0
1.508IleLys: 1.508 ± 0.0
4.9IleLeu: 4.9 ± 0.0
1.885IleMet: 1.885 ± 0.0
0.754IleAsn: 0.754 ± 0.0
4.146IlePro: 4.146 ± 0.0
2.262IleGln: 2.262 ± 0.0
3.392IleArg: 3.392 ± 0.0
3.015IleSer: 3.015 ± 0.0
4.146IleThr: 4.146 ± 0.0
3.392IleVal: 3.392 ± 0.0
0.0IleTrp: 0.0 ± 0.0
1.131IleTyr: 1.131 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.523LysAla: 4.523 ± 0.0
1.131LysCys: 1.131 ± 0.0
3.392LysAsp: 3.392 ± 0.0
3.769LysGlu: 3.769 ± 0.0
2.639LysPhe: 2.639 ± 0.0
6.408LysGly: 6.408 ± 0.0
1.131LysHis: 1.131 ± 0.0
3.015LysIle: 3.015 ± 0.0
3.392LysLys: 3.392 ± 0.0
2.262LysLeu: 2.262 ± 0.0
1.131LysMet: 1.131 ± 0.0
0.754LysAsn: 0.754 ± 0.0
2.639LysPro: 2.639 ± 0.0
2.262LysGln: 2.262 ± 0.0
1.508LysArg: 1.508 ± 0.0
3.015LysSer: 3.015 ± 0.0
4.523LysThr: 4.523 ± 0.0
2.639LysVal: 2.639 ± 0.0
1.885LysTrp: 1.885 ± 0.0
1.885LysTyr: 1.885 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
7.539LeuAla: 7.539 ± 0.0
2.262LeuCys: 2.262 ± 0.0
6.785LeuAsp: 6.785 ± 0.0
3.015LeuGlu: 3.015 ± 0.0
1.508LeuPhe: 1.508 ± 0.0
7.916LeuGly: 7.916 ± 0.0
1.131LeuHis: 1.131 ± 0.0
4.146LeuIle: 4.146 ± 0.0
4.9LeuLys: 4.9 ± 0.0
6.408LeuLeu: 6.408 ± 0.0
1.508LeuMet: 1.508 ± 0.0
4.146LeuAsn: 4.146 ± 0.0
6.408LeuPro: 6.408 ± 0.0
2.262LeuGln: 2.262 ± 0.0
3.769LeuArg: 3.769 ± 0.0
5.277LeuSer: 5.277 ± 0.0
4.9LeuThr: 4.9 ± 0.0
6.031LeuVal: 6.031 ± 0.0
0.754LeuTrp: 0.754 ± 0.0
1.885LeuTyr: 1.885 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
3.015MetAla: 3.015 ± 0.0
1.508MetCys: 1.508 ± 0.0
1.131MetAsp: 1.131 ± 0.0
0.377MetGlu: 0.377 ± 0.0
1.885MetPhe: 1.885 ± 0.0
1.131MetGly: 1.131 ± 0.0
0.0MetHis: 0.0 ± 0.0
1.131MetIle: 1.131 ± 0.0
0.754MetLys: 0.754 ± 0.0
1.508MetLeu: 1.508 ± 0.0
0.0MetMet: 0.0 ± 0.0
0.377MetAsn: 0.377 ± 0.0
0.377MetPro: 0.377 ± 0.0
2.262MetGln: 2.262 ± 0.0
1.131MetArg: 1.131 ± 0.0
2.262MetSer: 2.262 ± 0.0
2.639MetThr: 2.639 ± 0.0
3.015MetVal: 3.015 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
1.885AsnAla: 1.885 ± 0.0
0.377AsnCys: 0.377 ± 0.0
0.754AsnAsp: 0.754 ± 0.0
0.754AsnGlu: 0.754 ± 0.0
1.508AsnPhe: 1.508 ± 0.0
3.769AsnGly: 3.769 ± 0.0
0.754AsnHis: 0.754 ± 0.0
3.392AsnIle: 3.392 ± 0.0
1.885AsnLys: 1.885 ± 0.0
3.392AsnLeu: 3.392 ± 0.0
1.131AsnMet: 1.131 ± 0.0
1.508AsnAsn: 1.508 ± 0.0
1.885AsnPro: 1.885 ± 0.0
1.131AsnGln: 1.131 ± 0.0
0.754AsnArg: 0.754 ± 0.0
2.262AsnSer: 2.262 ± 0.0
3.392AsnThr: 3.392 ± 0.0
3.392AsnVal: 3.392 ± 0.0
1.131AsnTrp: 1.131 ± 0.0
0.754AsnTyr: 0.754 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
4.146ProAla: 4.146 ± 0.0
0.754ProCys: 0.754 ± 0.0
5.277ProAsp: 5.277 ± 0.0
3.769ProGlu: 3.769 ± 0.0
1.885ProPhe: 1.885 ± 0.0
3.392ProGly: 3.392 ± 0.0
1.131ProHis: 1.131 ± 0.0
2.639ProIle: 2.639 ± 0.0
6.031ProLys: 6.031 ± 0.0
3.015ProLeu: 3.015 ± 0.0
0.754ProMet: 0.754 ± 0.0
0.377ProAsn: 0.377 ± 0.0
3.015ProPro: 3.015 ± 0.0
3.015ProGln: 3.015 ± 0.0
2.262ProArg: 2.262 ± 0.0
1.885ProSer: 1.885 ± 0.0
4.146ProThr: 4.146 ± 0.0
4.146ProVal: 4.146 ± 0.0
1.131ProTrp: 1.131 ± 0.0
1.131ProTyr: 1.131 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.639GlnAla: 2.639 ± 0.0
0.754GlnCys: 0.754 ± 0.0
3.392GlnAsp: 3.392 ± 0.0
1.885GlnGlu: 1.885 ± 0.0
1.885GlnPhe: 1.885 ± 0.0
3.015GlnGly: 3.015 ± 0.0
0.377GlnHis: 0.377 ± 0.0
0.377GlnIle: 0.377 ± 0.0
2.262GlnLys: 2.262 ± 0.0
5.277GlnLeu: 5.277 ± 0.0
0.377GlnMet: 0.377 ± 0.0
1.131GlnAsn: 1.131 ± 0.0
2.639GlnPro: 2.639 ± 0.0
1.508GlnGln: 1.508 ± 0.0
1.885GlnArg: 1.885 ± 0.0
2.639GlnSer: 2.639 ± 0.0
3.392GlnThr: 3.392 ± 0.0
3.015GlnVal: 3.015 ± 0.0
2.262GlnTrp: 2.262 ± 0.0
1.885GlnTyr: 1.885 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.392ArgAla: 3.392 ± 0.0
0.377ArgCys: 0.377 ± 0.0
2.262ArgAsp: 2.262 ± 0.0
1.885ArgGlu: 1.885 ± 0.0
3.015ArgPhe: 3.015 ± 0.0
3.015ArgGly: 3.015 ± 0.0
0.0ArgHis: 0.0 ± 0.0
3.015ArgIle: 3.015 ± 0.0
1.508ArgLys: 1.508 ± 0.0
3.769ArgLeu: 3.769 ± 0.0
1.508ArgMet: 1.508 ± 0.0
1.131ArgAsn: 1.131 ± 0.0
2.639ArgPro: 2.639 ± 0.0
2.262ArgGln: 2.262 ± 0.0
3.015ArgArg: 3.015 ± 0.0
4.523ArgSer: 4.523 ± 0.0
2.262ArgThr: 2.262 ± 0.0
4.146ArgVal: 4.146 ± 0.0
0.754ArgTrp: 0.754 ± 0.0
3.392ArgTyr: 3.392 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.769SerAla: 3.769 ± 0.0
1.131SerCys: 1.131 ± 0.0
5.277SerAsp: 5.277 ± 0.0
4.146SerGlu: 4.146 ± 0.0
2.262SerPhe: 2.262 ± 0.0
3.015SerGly: 3.015 ± 0.0
1.508SerHis: 1.508 ± 0.0
1.885SerIle: 1.885 ± 0.0
1.885SerLys: 1.885 ± 0.0
4.9SerLeu: 4.9 ± 0.0
1.131SerMet: 1.131 ± 0.0
3.015SerAsn: 3.015 ± 0.0
3.015SerPro: 3.015 ± 0.0
3.015SerGln: 3.015 ± 0.0
1.885SerArg: 1.885 ± 0.0
3.769SerSer: 3.769 ± 0.0
6.031SerThr: 6.031 ± 0.0
6.031SerVal: 6.031 ± 0.0
1.131SerTrp: 1.131 ± 0.0
1.131SerTyr: 1.131 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
5.277ThrAla: 5.277 ± 0.0
0.754ThrCys: 0.754 ± 0.0
5.277ThrAsp: 5.277 ± 0.0
2.639ThrGlu: 2.639 ± 0.0
1.885ThrPhe: 1.885 ± 0.0
6.785ThrGly: 6.785 ± 0.0
2.639ThrHis: 2.639 ± 0.0
5.654ThrIle: 5.654 ± 0.0
3.392ThrLys: 3.392 ± 0.0
6.408ThrLeu: 6.408 ± 0.0
1.508ThrMet: 1.508 ± 0.0
3.015ThrAsn: 3.015 ± 0.0
5.277ThrPro: 5.277 ± 0.0
4.9ThrGln: 4.9 ± 0.0
3.769ThrArg: 3.769 ± 0.0
5.277ThrSer: 5.277 ± 0.0
6.408ThrThr: 6.408 ± 0.0
3.769ThrVal: 3.769 ± 0.0
2.639ThrTrp: 2.639 ± 0.0
3.015ThrTyr: 3.015 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.146ValAla: 4.146 ± 0.0
0.754ValCys: 0.754 ± 0.0
3.015ValAsp: 3.015 ± 0.0
5.654ValGlu: 5.654 ± 0.0
2.262ValPhe: 2.262 ± 0.0
2.639ValGly: 2.639 ± 0.0
0.754ValHis: 0.754 ± 0.0
2.639ValIle: 2.639 ± 0.0
4.9ValLys: 4.9 ± 0.0
4.523ValLeu: 4.523 ± 0.0
2.639ValMet: 2.639 ± 0.0
4.9ValAsn: 4.9 ± 0.0
5.277ValPro: 5.277 ± 0.0
2.639ValGln: 2.639 ± 0.0
4.146ValArg: 4.146 ± 0.0
4.9ValSer: 4.9 ± 0.0
6.785ValThr: 6.785 ± 0.0
6.785ValVal: 6.785 ± 0.0
0.754ValTrp: 0.754 ± 0.0
3.015ValTyr: 3.015 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.377TrpAla: 0.377 ± 0.0
0.0TrpCys: 0.0 ± 0.0
1.885TrpAsp: 1.885 ± 0.0
1.131TrpGlu: 1.131 ± 0.0
0.377TrpPhe: 0.377 ± 0.0
1.131TrpGly: 1.131 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.508TrpIle: 1.508 ± 0.0
1.508TrpLys: 1.508 ± 0.0
2.262TrpLeu: 2.262 ± 0.0
0.377TrpMet: 0.377 ± 0.0
0.754TrpAsn: 0.754 ± 0.0
0.0TrpPro: 0.0 ± 0.0
1.131TrpGln: 1.131 ± 0.0
0.754TrpArg: 0.754 ± 0.0
1.131TrpSer: 1.131 ± 0.0
2.262TrpThr: 2.262 ± 0.0
2.639TrpVal: 2.639 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.885TyrAla: 1.885 ± 0.0
0.0TyrCys: 0.0 ± 0.0
1.508TyrAsp: 1.508 ± 0.0
1.131TyrGlu: 1.131 ± 0.0
0.377TyrPhe: 0.377 ± 0.0
2.639TyrGly: 2.639 ± 0.0
0.377TyrHis: 0.377 ± 0.0
1.885TyrIle: 1.885 ± 0.0
1.885TyrLys: 1.885 ± 0.0
5.654TyrLeu: 5.654 ± 0.0
0.754TyrMet: 0.754 ± 0.0
1.131TyrAsn: 1.131 ± 0.0
1.885TyrPro: 1.885 ± 0.0
1.508TyrGln: 1.508 ± 0.0
1.508TyrArg: 1.508 ± 0.0
0.377TyrSer: 0.377 ± 0.0
4.146TyrThr: 4.146 ± 0.0
1.508TyrVal: 1.508 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
1.131TyrTyr: 1.131 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2654 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski