Xanthomonas virus Cf1c

Taxonomy: Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Coriovirus

Average proteome isoelectric point is 8.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q38198|Q38198_9VIRU Zot domain-containing protein OS=Xanthomonas virus Cf1c OX=10862 PE=4 SV=1
MM1 pKa = 7.97IGDD4 pKa = 3.81TASISLLTGLPGSGKK19 pKa = 8.34SLRR22 pKa = 11.84IIQAIRR28 pKa = 11.84YY29 pKa = 9.0LMDD32 pKa = 4.18KK33 pKa = 9.88GAHH36 pKa = 5.53VYY38 pKa = 9.57VCNIDD43 pKa = 4.48GISVPGTTPWADD55 pKa = 3.15PHH57 pKa = 6.53KK58 pKa = 10.23WQDD61 pKa = 3.48LPAGSILFVDD71 pKa = 4.95EE72 pKa = 4.6AQHH75 pKa = 6.13FFPARR80 pKa = 11.84RR81 pKa = 11.84GGDD84 pKa = 3.26PVEE87 pKa = 4.56TIKK90 pKa = 11.15AMSTIRR96 pKa = 11.84HH97 pKa = 5.97DD98 pKa = 3.9GVRR101 pKa = 11.84LVLATQQPNYY111 pKa = 10.18LDD113 pKa = 3.38TYY115 pKa = 10.94LRR117 pKa = 11.84GLVGYY122 pKa = 9.73HH123 pKa = 5.24EE124 pKa = 4.67HH125 pKa = 7.76LLRR128 pKa = 11.84QSGKK132 pKa = 9.0QKK134 pKa = 9.71TFIFRR139 pKa = 11.84NSQIIEE145 pKa = 4.26EE146 pKa = 4.36VRR148 pKa = 11.84SPLPRR153 pKa = 11.84IKK155 pKa = 10.39KK156 pKa = 9.94LYY158 pKa = 10.38DD159 pKa = 3.24YY160 pKa = 9.6EE161 pKa = 4.33VWKK164 pKa = 10.87QPTEE168 pKa = 3.77CFKK171 pKa = 10.57FYY173 pKa = 10.94KK174 pKa = 9.94SAEE177 pKa = 4.12VHH179 pKa = 4.39TMKK182 pKa = 10.73YY183 pKa = 10.3QMPALVKK190 pKa = 9.54KK191 pKa = 10.45ALMILPVVALLAGGAWYY208 pKa = 9.99AVYY211 pKa = 10.38RR212 pKa = 11.84DD213 pKa = 3.29TMFAKK218 pKa = 10.52KK219 pKa = 10.24ADD221 pKa = 3.69AAPANKK227 pKa = 8.2TAPSGPSLAGTASAGAAARR246 pKa = 11.84PKK248 pKa = 10.47VNSAEE253 pKa = 4.32DD254 pKa = 3.76YY255 pKa = 10.77VGQLVPLVADD265 pKa = 4.41VPWSAPAYY273 pKa = 8.48VDD275 pKa = 3.54RR276 pKa = 11.84PVVSDD281 pKa = 3.01PHH283 pKa = 6.85VYY285 pKa = 10.69CMATEE290 pKa = 4.17NTCRR294 pKa = 11.84CVTEE298 pKa = 3.99QNSRR302 pKa = 11.84VVMRR306 pKa = 11.84DD307 pKa = 3.27DD308 pKa = 3.3VCRR311 pKa = 11.84DD312 pKa = 2.92IARR315 pKa = 11.84WGEE318 pKa = 3.85PYY320 pKa = 10.66NPYY323 pKa = 10.23KK324 pKa = 10.21PPHH327 pKa = 6.52SPAQKK332 pKa = 9.84QQDD335 pKa = 4.03SPVAEE340 pKa = 4.11ATQPKK345 pKa = 8.9PQVPQQSGAVSSSVQRR361 pKa = 11.84ATRR364 pKa = 11.84SLGTFPEE371 pKa = 4.46SPPYY375 pKa = 9.32QTTTYY380 pKa = 9.45TPPTTRR386 pKa = 11.84DD387 pKa = 3.05LL388 pKa = 4.02

Molecular weight: 42.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q38198|Q38198_9VIRU Zot domain-containing protein OS=Xanthomonas virus Cf1c OX=10862 PE=4 SV=1
MM1 pKa = 7.97IGDD4 pKa = 3.81TASISLLTGLPGSGKK19 pKa = 8.34SLRR22 pKa = 11.84IIQAIRR28 pKa = 11.84YY29 pKa = 9.0LMDD32 pKa = 4.18KK33 pKa = 9.88GAHH36 pKa = 5.53VYY38 pKa = 9.57VCNIDD43 pKa = 4.48GISVPGTTPWADD55 pKa = 3.15PHH57 pKa = 6.53KK58 pKa = 10.23WQDD61 pKa = 3.48LPAGSILFVDD71 pKa = 4.95EE72 pKa = 4.6AQHH75 pKa = 6.13FFPARR80 pKa = 11.84RR81 pKa = 11.84GGDD84 pKa = 3.26PVEE87 pKa = 4.56TIKK90 pKa = 11.15AMSTIRR96 pKa = 11.84HH97 pKa = 5.97DD98 pKa = 3.9GVRR101 pKa = 11.84LVLATQQPNYY111 pKa = 10.18LDD113 pKa = 3.38TYY115 pKa = 10.94LRR117 pKa = 11.84GLVGYY122 pKa = 9.73HH123 pKa = 5.24EE124 pKa = 4.67HH125 pKa = 7.76LLRR128 pKa = 11.84QSGKK132 pKa = 9.0QKK134 pKa = 9.71TFIFRR139 pKa = 11.84NSQIIEE145 pKa = 4.26EE146 pKa = 4.36VRR148 pKa = 11.84SPLPRR153 pKa = 11.84IKK155 pKa = 10.39KK156 pKa = 9.94LYY158 pKa = 10.38DD159 pKa = 3.24YY160 pKa = 9.6EE161 pKa = 4.33VWKK164 pKa = 10.87QPTEE168 pKa = 3.77CFKK171 pKa = 10.57FYY173 pKa = 10.94KK174 pKa = 9.94SAEE177 pKa = 4.12VHH179 pKa = 4.39TMKK182 pKa = 10.73YY183 pKa = 10.3QMPALVKK190 pKa = 9.54KK191 pKa = 10.45ALMILPVVALLAGGAWYY208 pKa = 9.99AVYY211 pKa = 10.38RR212 pKa = 11.84DD213 pKa = 3.29TMFAKK218 pKa = 10.52KK219 pKa = 10.24ADD221 pKa = 3.69AAPANKK227 pKa = 8.2TAPSGPSLAGTASAGAAARR246 pKa = 11.84PKK248 pKa = 10.47VNSAEE253 pKa = 4.32DD254 pKa = 3.76YY255 pKa = 10.77VGQLVPLVADD265 pKa = 4.41VPWSAPAYY273 pKa = 8.48VDD275 pKa = 3.54RR276 pKa = 11.84PVVSDD281 pKa = 3.01PHH283 pKa = 6.85VYY285 pKa = 10.69CMATEE290 pKa = 4.17NTCRR294 pKa = 11.84CVTEE298 pKa = 3.99QNSRR302 pKa = 11.84VVMRR306 pKa = 11.84DD307 pKa = 3.27DD308 pKa = 3.3VCRR311 pKa = 11.84DD312 pKa = 2.92IARR315 pKa = 11.84WGEE318 pKa = 3.85PYY320 pKa = 10.66NPYY323 pKa = 10.23KK324 pKa = 10.21PPHH327 pKa = 6.52SPAQKK332 pKa = 9.84QQDD335 pKa = 4.03SPVAEE340 pKa = 4.11ATQPKK345 pKa = 8.9PQVPQQSGAVSSSVQRR361 pKa = 11.84ATRR364 pKa = 11.84SLGTFPEE371 pKa = 4.46SPPYY375 pKa = 9.32QTTTYY380 pKa = 9.45TPPTTRR386 pKa = 11.84DD387 pKa = 3.05LL388 pKa = 4.02

Molecular weight: 42.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

388

388

388

388.0

42.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.052 ± 0.0

1.546 ± 0.0

5.412 ± 0.0

3.608 ± 0.0

2.32 ± 0.0

5.928 ± 0.0

2.32 ± 0.0

4.124 ± 0.0

5.412 ± 0.0

6.701 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.32 ± 0.0

2.062 ± 0.0

9.278 ± 0.0

5.412 ± 0.0

5.67 ± 0.0

6.701 ± 0.0

6.701 ± 0.0

8.247 ± 0.0

1.546 ± 0.0

4.639 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski