Serratia phage MTx

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Myosmarvirus; Serratia virus MTx

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 103 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A482MGP0|A0A482MGP0_9CAUD Uncharacterized protein OS=Serratia phage MTx OX=2557553 GN=CPT_MTx_046 PE=4 SV=1
MM1 pKa = 7.79AFTIEE6 pKa = 4.31SIKK9 pKa = 10.51AAKK12 pKa = 9.57FADD15 pKa = 3.65AGCYY19 pKa = 7.3VTLEE23 pKa = 4.47SALEE27 pKa = 4.01TYY29 pKa = 10.31IGVKK33 pKa = 7.06VTRR36 pKa = 11.84EE37 pKa = 3.76LSEE40 pKa = 4.64GEE42 pKa = 3.49FDD44 pKa = 5.39AIFAEE49 pKa = 4.61FFEE52 pKa = 5.41DD53 pKa = 3.41EE54 pKa = 4.35GRR56 pKa = 11.84DD57 pKa = 3.65TSSDD61 pKa = 3.06GSLEE65 pKa = 4.0IDD67 pKa = 3.02GVEE70 pKa = 3.93YY71 pKa = 11.15NFAIDD76 pKa = 4.41LGRR79 pKa = 11.84KK80 pKa = 9.1CFIIFYY86 pKa = 9.24EE87 pKa = 4.45IYY89 pKa = 10.98VKK91 pKa = 10.79DD92 pKa = 3.85EE93 pKa = 4.29NGNDD97 pKa = 3.53TDD99 pKa = 4.19EE100 pKa = 4.63VDD102 pKa = 3.74LFSAKK107 pKa = 9.98GFAIEE112 pKa = 4.18EE113 pKa = 4.32LL114 pKa = 3.87

Molecular weight: 12.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A482MGN9|A0A482MGN9_9CAUD Uncharacterized protein OS=Serratia phage MTx OX=2557553 GN=CPT_MTx_004 PE=4 SV=1
MM1 pKa = 7.35LVLRR5 pKa = 11.84RR6 pKa = 11.84AIFSYY11 pKa = 10.38RR12 pKa = 11.84RR13 pKa = 11.84AAWEE17 pKa = 3.98SEE19 pKa = 3.66EE20 pKa = 4.12RR21 pKa = 11.84APEE24 pKa = 4.04AKK26 pKa = 10.33ASASVRR32 pKa = 11.84FVGPAANLVSMPIHH46 pKa = 6.18FVV48 pKa = 3.09

Molecular weight: 5.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

103

0

103

21163

48

959

205.5

22.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.304 ± 0.302

1.172 ± 0.092

6.218 ± 0.172

6.091 ± 0.399

4.201 ± 0.13

7.267 ± 0.246

1.753 ± 0.143

6.389 ± 0.233

6.237 ± 0.317

7.263 ± 0.209

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.996 ± 0.129

4.943 ± 0.221

3.931 ± 0.179

3.894 ± 0.21

4.99 ± 0.188

6.077 ± 0.244

5.76 ± 0.284

6.752 ± 0.185

1.384 ± 0.079

3.379 ± 0.152
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski