Alkanindiges hydrocarboniclasticus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Alkanindiges

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2972 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1S8CTJ0|A0A1S8CTJ0_9GAMM MacA family efflux pump subunit OS=Alkanindiges hydrocarboniclasticus OX=1907941 GN=BKE30_09185 PE=3 SV=1
MM1 pKa = 7.7KK2 pKa = 10.11KK3 pKa = 9.69YY4 pKa = 10.65QCIVCGWIYY13 pKa = 11.09DD14 pKa = 4.04EE15 pKa = 5.55AEE17 pKa = 3.9GWPQDD22 pKa = 3.9GIVPGTKK29 pKa = 8.89WDD31 pKa = 5.51DD32 pKa = 3.76IPDD35 pKa = 3.76DD36 pKa = 4.19WTCPDD41 pKa = 4.05CGVSKK46 pKa = 10.38MDD48 pKa = 4.0FEE50 pKa = 4.87MIEE53 pKa = 3.81II54 pKa = 4.3

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1S8CWZ3|A0A1S8CWZ3_9GAMM Leucine--tRNA ligase OS=Alkanindiges hydrocarboniclasticus OX=1907941 GN=leuS PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVIKK11 pKa = 10.38RR12 pKa = 11.84KK13 pKa = 9.23RR14 pKa = 11.84VHH16 pKa = 6.26GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.03GRR39 pKa = 11.84HH40 pKa = 5.34RR41 pKa = 11.84LTVV44 pKa = 3.07

Molecular weight: 5.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2972

0

2972

913620

41

2261

307.4

34.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.39 ± 0.055

0.958 ± 0.015

5.159 ± 0.034

5.337 ± 0.043

3.914 ± 0.035

6.69 ± 0.052

2.425 ± 0.03

6.265 ± 0.039

4.776 ± 0.039

10.724 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.518 ± 0.023

4.267 ± 0.039

4.357 ± 0.028

5.855 ± 0.059

4.881 ± 0.035

6.161 ± 0.042

5.384 ± 0.048

6.629 ± 0.035

1.277 ± 0.018

3.033 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski