Papaya leaf curl alphasatellite

Taxonomy: Viruses; Alphasatellitidae; Geminialphasatellitinae; unclassified Begomovirus-associated alphasatellites

Average proteome isoelectric point is 8.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V9I5Y2|V9I5Y2_9VIRU Rep protein OS=Papaya leaf curl alphasatellite OX=1112202 PE=4 SV=1
MM1 pKa = 6.91SHH3 pKa = 5.9SRR5 pKa = 11.84NWCFTIFNYY14 pKa = 9.97VLPLFTSLPEE24 pKa = 3.69WANYY28 pKa = 10.56LIFQEE33 pKa = 4.94EE34 pKa = 4.56EE35 pKa = 4.2CPTTKK40 pKa = 9.85KK41 pKa = 10.48RR42 pKa = 11.84HH43 pKa = 4.56IQGYY47 pKa = 9.45VNLNAINDD55 pKa = 3.67LRR57 pKa = 11.84SCKK60 pKa = 10.1RR61 pKa = 11.84NCQMGLISKK70 pKa = 9.63HH71 pKa = 6.19AGVHH75 pKa = 5.71HH76 pKa = 6.53PAIEE80 pKa = 4.6IIAEE84 pKa = 4.07RR85 pKa = 11.84MIQEE89 pKa = 4.37STVHH93 pKa = 6.17GSSEE97 pKa = 4.18SLRR100 pKa = 11.84KK101 pKa = 9.84QGATRR106 pKa = 11.84GRR108 pKa = 11.84RR109 pKa = 11.84WNVFRR114 pKa = 11.84KK115 pKa = 6.43TQKK118 pKa = 10.89NLDD121 pKa = 4.23LPTLNCIVAAWRR133 pKa = 11.84RR134 pKa = 11.84RR135 pKa = 11.84LIRR138 pKa = 11.84SSVVWYY144 pKa = 10.5SLYY147 pKa = 10.2LTDD150 pKa = 6.14LGSSWLRR157 pKa = 11.84RR158 pKa = 11.84YY159 pKa = 6.34WTRR162 pKa = 11.84AQMIEE167 pKa = 4.04LSYY170 pKa = 11.76GCMALKK176 pKa = 10.47AMKK179 pKa = 9.93VKK181 pKa = 10.2PHH183 pKa = 5.85GLRR186 pKa = 11.84PRR188 pKa = 11.84FSKK191 pKa = 10.84DD192 pKa = 2.69GSIQGEE198 pKa = 4.45EE199 pKa = 4.08KK200 pKa = 10.43EE201 pKa = 4.3KK202 pKa = 10.42TYY204 pKa = 9.36NTSMRR209 pKa = 11.84SIWVTVYY216 pKa = 9.5STSPDD221 pKa = 2.92RR222 pKa = 11.84WKK224 pKa = 9.58TIYY227 pKa = 10.65SILYY231 pKa = 7.95YY232 pKa = 10.36KK233 pKa = 10.42KK234 pKa = 10.57LRR236 pKa = 11.84IDD238 pKa = 3.5YY239 pKa = 8.35WSSKK243 pKa = 10.09YY244 pKa = 10.7EE245 pKa = 4.52PIDD248 pKa = 3.78FNCSDD253 pKa = 3.55KK254 pKa = 11.12VHH256 pKa = 6.12VVVLSNFLPCLDD268 pKa = 4.26LEE270 pKa = 4.53YY271 pKa = 10.87NNRR274 pKa = 11.84GEE276 pKa = 4.44TVKK279 pKa = 10.84KK280 pKa = 10.05PLLSRR285 pKa = 11.84DD286 pKa = 3.15RR287 pKa = 11.84VFLINIDD294 pKa = 3.84EE295 pKa = 4.66SVCGHH300 pKa = 7.2PDD302 pKa = 3.41DD303 pKa = 5.71LKK305 pKa = 11.51SFDD308 pKa = 4.36MYY310 pKa = 11.58LEE312 pKa = 4.15

Molecular weight: 36.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V9I5Y2|V9I5Y2_9VIRU Rep protein OS=Papaya leaf curl alphasatellite OX=1112202 PE=4 SV=1
MM1 pKa = 6.91SHH3 pKa = 5.9SRR5 pKa = 11.84NWCFTIFNYY14 pKa = 9.97VLPLFTSLPEE24 pKa = 3.69WANYY28 pKa = 10.56LIFQEE33 pKa = 4.94EE34 pKa = 4.56EE35 pKa = 4.2CPTTKK40 pKa = 9.85KK41 pKa = 10.48RR42 pKa = 11.84HH43 pKa = 4.56IQGYY47 pKa = 9.45VNLNAINDD55 pKa = 3.67LRR57 pKa = 11.84SCKK60 pKa = 10.1RR61 pKa = 11.84NCQMGLISKK70 pKa = 9.63HH71 pKa = 6.19AGVHH75 pKa = 5.71HH76 pKa = 6.53PAIEE80 pKa = 4.6IIAEE84 pKa = 4.07RR85 pKa = 11.84MIQEE89 pKa = 4.37STVHH93 pKa = 6.17GSSEE97 pKa = 4.18SLRR100 pKa = 11.84KK101 pKa = 9.84QGATRR106 pKa = 11.84GRR108 pKa = 11.84RR109 pKa = 11.84WNVFRR114 pKa = 11.84KK115 pKa = 6.43TQKK118 pKa = 10.89NLDD121 pKa = 4.23LPTLNCIVAAWRR133 pKa = 11.84RR134 pKa = 11.84RR135 pKa = 11.84LIRR138 pKa = 11.84SSVVWYY144 pKa = 10.5SLYY147 pKa = 10.2LTDD150 pKa = 6.14LGSSWLRR157 pKa = 11.84RR158 pKa = 11.84YY159 pKa = 6.34WTRR162 pKa = 11.84AQMIEE167 pKa = 4.04LSYY170 pKa = 11.76GCMALKK176 pKa = 10.47AMKK179 pKa = 9.93VKK181 pKa = 10.2PHH183 pKa = 5.85GLRR186 pKa = 11.84PRR188 pKa = 11.84FSKK191 pKa = 10.84DD192 pKa = 2.69GSIQGEE198 pKa = 4.45EE199 pKa = 4.08KK200 pKa = 10.43EE201 pKa = 4.3KK202 pKa = 10.42TYY204 pKa = 9.36NTSMRR209 pKa = 11.84SIWVTVYY216 pKa = 9.5STSPDD221 pKa = 2.92RR222 pKa = 11.84WKK224 pKa = 9.58TIYY227 pKa = 10.65SILYY231 pKa = 7.95YY232 pKa = 10.36KK233 pKa = 10.42KK234 pKa = 10.57LRR236 pKa = 11.84IDD238 pKa = 3.5YY239 pKa = 8.35WSSKK243 pKa = 10.09YY244 pKa = 10.7EE245 pKa = 4.52PIDD248 pKa = 3.78FNCSDD253 pKa = 3.55KK254 pKa = 11.12VHH256 pKa = 6.12VVVLSNFLPCLDD268 pKa = 4.26LEE270 pKa = 4.53YY271 pKa = 10.87NNRR274 pKa = 11.84GEE276 pKa = 4.44TVKK279 pKa = 10.84KK280 pKa = 10.05PLLSRR285 pKa = 11.84DD286 pKa = 3.15RR287 pKa = 11.84VFLINIDD294 pKa = 3.84EE295 pKa = 4.66SVCGHH300 pKa = 7.2PDD302 pKa = 3.41DD303 pKa = 5.71LKK305 pKa = 11.51SFDD308 pKa = 4.36MYY310 pKa = 11.58LEE312 pKa = 4.15

Molecular weight: 36.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

312

312

312

312.0

36.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.526 ± 0.0

2.885 ± 0.0

4.487 ± 0.0

5.449 ± 0.0

3.205 ± 0.0

4.167 ± 0.0

2.885 ± 0.0

6.41 ± 0.0

6.731 ± 0.0

9.615 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.564 ± 0.0

5.128 ± 0.0

3.846 ± 0.0

2.564 ± 0.0

8.013 ± 0.0

9.295 ± 0.0

5.128 ± 0.0

5.769 ± 0.0

3.205 ± 0.0

5.128 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski