Cedar virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Henipavirus; Cedar henipavirus

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J7GXK9|J7GXK9_9MONO GDP polyribonucleotidyltransferase OS=Cedar virus OX=1221391 GN=L PE=3 SV=1
MM1 pKa = 8.2DD2 pKa = 5.37KK3 pKa = 10.94LQLIEE8 pKa = 5.95DD9 pKa = 4.16GLSTINFIQEE19 pKa = 4.0NKK21 pKa = 10.16EE22 pKa = 4.07KK23 pKa = 10.43LQHH26 pKa = 5.88SYY28 pKa = 10.56GRR30 pKa = 11.84SSIRR34 pKa = 11.84EE35 pKa = 3.97PPTSVRR41 pKa = 11.84VEE43 pKa = 3.82EE44 pKa = 4.17WEE46 pKa = 3.95KK47 pKa = 10.72FIRR50 pKa = 11.84KK51 pKa = 8.52IASGPEE57 pKa = 3.85QVQGGGSEE65 pKa = 4.28TEE67 pKa = 3.77ITGDD71 pKa = 3.21NGDD74 pKa = 4.06RR75 pKa = 11.84GNFTNPDD82 pKa = 3.05QGGGVTGQFEE92 pKa = 4.1EE93 pKa = 6.24RR94 pKa = 11.84YY95 pKa = 9.42QKK97 pKa = 10.02WGSQDD102 pKa = 3.96SEE104 pKa = 4.43LQLDD108 pKa = 3.88PMVVHH113 pKa = 7.27DD114 pKa = 4.41FFYY117 pKa = 10.91DD118 pKa = 3.6EE119 pKa = 5.0RR120 pKa = 11.84RR121 pKa = 11.84EE122 pKa = 3.94NPDD125 pKa = 2.74NGKK128 pKa = 10.11YY129 pKa = 10.09DD130 pKa = 3.63RR131 pKa = 11.84SSKK134 pKa = 10.47KK135 pKa = 9.54RR136 pKa = 11.84DD137 pKa = 3.57NIRR140 pKa = 11.84EE141 pKa = 4.05GTRR144 pKa = 11.84QDD146 pKa = 3.19KK147 pKa = 11.01YY148 pKa = 11.32NNQSTDD154 pKa = 3.16EE155 pKa = 4.7LLSCLQPSSKK165 pKa = 10.95NDD167 pKa = 3.36VIKK170 pKa = 11.14NEE172 pKa = 4.17STSVSNLHH180 pKa = 5.11VTGNKK185 pKa = 9.63LNPDD189 pKa = 4.05AKK191 pKa = 10.18PFEE194 pKa = 4.46PTSQSKK200 pKa = 7.81EE201 pKa = 4.08HH202 pKa = 6.63PTTTQHH208 pKa = 6.35NKK210 pKa = 9.71NDD212 pKa = 3.54HH213 pKa = 5.47QTDD216 pKa = 3.41DD217 pKa = 3.73DD218 pKa = 4.55YY219 pKa = 12.04KK220 pKa = 11.08NRR222 pKa = 11.84RR223 pKa = 11.84SSEE226 pKa = 3.89NNVISDD232 pKa = 3.79HH233 pKa = 5.79ATTMEE238 pKa = 4.83DD239 pKa = 3.19NNNFIPATKK248 pKa = 9.99RR249 pKa = 11.84KK250 pKa = 9.02NALSEE255 pKa = 4.36PIYY258 pKa = 10.7VQVLPSNTEE267 pKa = 3.88GFSGKK272 pKa = 10.03DD273 pKa = 3.36YY274 pKa = 11.2PLLKK278 pKa = 10.75DD279 pKa = 3.4NSVKK283 pKa = 10.2KK284 pKa = 10.19RR285 pKa = 11.84AEE287 pKa = 3.83PVILEE292 pKa = 4.5TANHH296 pKa = 6.67PAGSADD302 pKa = 3.22QDD304 pKa = 3.86TNQIEE309 pKa = 4.22EE310 pKa = 4.14NMQFNLPKK318 pKa = 10.68LLTEE322 pKa = 4.67DD323 pKa = 3.91TDD325 pKa = 6.4DD326 pKa = 4.5EE327 pKa = 5.16PEE329 pKa = 4.55DD330 pKa = 4.68NNDD333 pKa = 3.58SMPLEE338 pKa = 4.02EE339 pKa = 6.31DD340 pKa = 2.77IRR342 pKa = 11.84EE343 pKa = 4.13IGSMLKK349 pKa = 10.72DD350 pKa = 3.24GTKK353 pKa = 10.24DD354 pKa = 2.45IKK356 pKa = 10.37TRR358 pKa = 11.84MNEE361 pKa = 3.26IDD363 pKa = 4.36DD364 pKa = 5.01AIKK367 pKa = 10.53KK368 pKa = 9.49INKK371 pKa = 8.66KK372 pKa = 10.02SKK374 pKa = 10.14NRR376 pKa = 11.84SLDD379 pKa = 3.53LEE381 pKa = 4.54SDD383 pKa = 3.55GKK385 pKa = 10.72DD386 pKa = 3.05QGRR389 pKa = 11.84RR390 pKa = 11.84DD391 pKa = 3.65PSVDD395 pKa = 3.35LGIKK399 pKa = 9.14KK400 pKa = 10.2RR401 pKa = 11.84KK402 pKa = 9.02EE403 pKa = 3.75GLKK406 pKa = 10.61AAMQKK411 pKa = 8.91TKK413 pKa = 9.98EE414 pKa = 3.87QLSIKK419 pKa = 8.78VEE421 pKa = 4.07RR422 pKa = 11.84EE423 pKa = 3.01IGLNDD428 pKa = 5.35RR429 pKa = 11.84ICQNSKK435 pKa = 9.84MSTEE439 pKa = 3.82KK440 pKa = 10.86KK441 pKa = 10.16LIYY444 pKa = 10.37AGMEE448 pKa = 3.75MEE450 pKa = 4.61YY451 pKa = 10.7GQTSTGSGGPQGSKK465 pKa = 10.68DD466 pKa = 3.52GTSDD470 pKa = 3.83DD471 pKa = 3.9VQVDD475 pKa = 3.36EE476 pKa = 6.32DD477 pKa = 4.26YY478 pKa = 11.69DD479 pKa = 3.7EE480 pKa = 6.58GEE482 pKa = 5.16DD483 pKa = 3.93YY484 pKa = 11.37EE485 pKa = 5.59AMPSDD490 pKa = 3.59RR491 pKa = 11.84FYY493 pKa = 9.19TTLSGEE499 pKa = 4.07QKK501 pKa = 10.94DD502 pKa = 5.22RR503 pKa = 11.84FDD505 pKa = 5.02LDD507 pKa = 3.84ANQMSQYY514 pKa = 10.98DD515 pKa = 3.88LEE517 pKa = 4.53AQVDD521 pKa = 3.96EE522 pKa = 4.5LTRR525 pKa = 11.84MNLILYY531 pKa = 9.99SRR533 pKa = 11.84LEE535 pKa = 4.18TTNKK539 pKa = 10.32LLIDD543 pKa = 3.73ILDD546 pKa = 4.21LAKK549 pKa = 10.63EE550 pKa = 4.05MPKK553 pKa = 10.39LVRR556 pKa = 11.84KK557 pKa = 9.78VDD559 pKa = 3.45NLEE562 pKa = 3.94RR563 pKa = 11.84QMGNLNMLTSTLEE576 pKa = 3.94GHH578 pKa = 7.15LSSVMIMIPGKK589 pKa = 10.2DD590 pKa = 3.28KK591 pKa = 11.34SEE593 pKa = 4.24KK594 pKa = 10.09EE595 pKa = 3.83IPKK598 pKa = 10.6NPDD601 pKa = 2.73LRR603 pKa = 11.84PILGRR608 pKa = 11.84SNTSLTDD615 pKa = 3.84VIDD618 pKa = 4.36LDD620 pKa = 4.11HH621 pKa = 7.0YY622 pKa = 10.19PDD624 pKa = 4.71KK625 pKa = 10.85GSKK628 pKa = 9.89GIKK631 pKa = 9.44PSGSGDD637 pKa = 3.2RR638 pKa = 11.84QYY640 pKa = 11.15IGSLEE645 pKa = 4.39SKK647 pKa = 10.5FSINDD652 pKa = 3.3EE653 pKa = 4.63YY654 pKa = 11.81NFAPYY659 pKa = 9.81PIRR662 pKa = 11.84DD663 pKa = 3.74EE664 pKa = 4.51LLLPGLRR671 pKa = 11.84DD672 pKa = 3.73DD673 pKa = 4.36KK674 pKa = 11.35TNASSFIPDD683 pKa = 3.49DD684 pKa = 3.65TDD686 pKa = 3.36RR687 pKa = 11.84SPMVLKK693 pKa = 10.59IIIRR697 pKa = 11.84QNIHH701 pKa = 6.49DD702 pKa = 4.51EE703 pKa = 4.22EE704 pKa = 4.74VKK706 pKa = 11.09DD707 pKa = 3.76EE708 pKa = 4.38LLSILEE714 pKa = 3.83QHH716 pKa = 5.77NTVEE720 pKa = 4.35EE721 pKa = 4.41LNEE724 pKa = 3.51IWNTVNDD731 pKa = 4.05YY732 pKa = 11.56LDD734 pKa = 4.0GNII737 pKa = 4.56

Molecular weight: 83.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J7H4I1|J7H4I1_9MONO Isoform of J7GXK5 Nonstructural protein C OS=Cedar virus OX=1221391 GN=P PE=2 SV=1
MM1 pKa = 7.74ASLLSILYY9 pKa = 9.99RR10 pKa = 11.84KK11 pKa = 8.81IRR13 pKa = 11.84KK14 pKa = 9.23NYY16 pKa = 10.27SILTEE21 pKa = 4.45DD22 pKa = 4.81PPSEE26 pKa = 4.05SHH28 pKa = 6.4PQVSGLKK35 pKa = 9.7SGRR38 pKa = 11.84NLFEE42 pKa = 5.72RR43 pKa = 11.84SLLDD47 pKa = 3.59LNKK50 pKa = 10.31FKK52 pKa = 11.51GEE54 pKa = 3.98DD55 pKa = 3.28LRR57 pKa = 11.84LRR59 pKa = 11.84SQAIMEE65 pKa = 4.41IEE67 pKa = 5.06AILPILIRR75 pKa = 11.84EE76 pKa = 4.63AEE78 pKa = 4.19SQDD81 pKa = 3.35NSKK84 pKa = 10.9KK85 pKa = 9.92GIKK88 pKa = 10.08NGGHH92 pKa = 7.5KK93 pKa = 9.29IQNYY97 pKa = 8.9NWTQWLYY104 pKa = 9.98TISSMTRR111 pKa = 11.84EE112 pKa = 3.87GRR114 pKa = 11.84IPTMEE119 pKa = 4.31NMTAALKK126 pKa = 10.86NGIISEE132 pKa = 4.36KK133 pKa = 9.08EE134 pKa = 3.32HH135 pKa = 7.04DD136 pKa = 4.84RR137 pKa = 11.84ISTIISLLMNYY148 pKa = 9.33CPAYY152 pKa = 9.9NHH154 pKa = 7.11LLRR157 pKa = 11.84TMSSRR162 pKa = 11.84MKK164 pKa = 10.11VHH166 pKa = 5.82QCQICMLQEE175 pKa = 3.94INN177 pKa = 4.08

Molecular weight: 20.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

1

7

5464

177

2501

780.6

88.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.734 ± 0.695

1.574 ± 0.407

6.57 ± 0.667

5.783 ± 0.641

3.715 ± 0.445

5.179 ± 0.425

2.05 ± 0.464

8.547 ± 0.724

7.485 ± 0.318

9.023 ± 0.28

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.928 ± 0.328

7.174 ± 0.533

4.228 ± 0.188

3.459 ± 0.33

4.85 ± 0.46

8.272 ± 0.491

5.966 ± 0.222

4.758 ± 0.416

0.86 ± 0.19

3.843 ± 0.465
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski