Amino acid dipepetide frequency for Rhizoctonia solani endornavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.44AlaAla: 4.44 ± 0.677
0.765AlaCys: 0.765 ± 0.114
4.746AlaAsp: 4.746 ± 0.823
3.062AlaGlu: 3.062 ± 0.457
1.072AlaPhe: 1.072 ± 0.51
3.674AlaGly: 3.674 ± 1.269
2.143AlaHis: 2.143 ± 0.415
4.287AlaIle: 4.287 ± 1.082
4.133AlaLys: 4.133 ± 0.053
7.042AlaLeu: 7.042 ± 0.48
2.603AlaMet: 2.603 ± 0.675
2.449AlaAsn: 2.449 ± 0.27
1.684AlaPro: 1.684 ± 0.323
2.143AlaGln: 2.143 ± 0.541
2.756AlaArg: 2.756 ± 0.354
4.746AlaSer: 4.746 ± 1.091
4.746AlaThr: 4.746 ± 0.823
3.521AlaVal: 3.521 ± 0.24
0.459AlaTrp: 0.459 ± 0.218
1.378AlaTyr: 1.378 ± 0.301
0.0AlaXaa: 0.0 ± 0.0
Cys
0.765CysAla: 0.765 ± 0.114
0.459CysCys: 0.459 ± 0.218
0.306CysAsp: 0.306 ± 0.811
0.459CysGlu: 0.459 ± 0.218
0.459CysPhe: 0.459 ± 0.26
0.765CysGly: 0.765 ± 0.114
0.153CysHis: 0.153 ± 0.073
0.612CysIle: 0.612 ± 0.665
0.459CysLys: 0.459 ± 0.26
1.684CysLeu: 1.684 ± 0.634
0.459CysMet: 0.459 ± 0.218
1.531CysAsn: 1.531 ± 0.707
0.919CysPro: 0.919 ± 0.041
0.306CysGln: 0.306 ± 0.146
0.612CysArg: 0.612 ± 0.665
1.684CysSer: 1.684 ± 0.156
0.919CysThr: 0.919 ± 0.437
0.919CysVal: 0.919 ± 0.52
0.153CysTrp: 0.153 ± 0.405
0.919CysTyr: 0.919 ± 0.998
0.0CysXaa: 0.0 ± 0.0
Asp
3.368AspAla: 3.368 ± 1.124
1.072AspCys: 1.072 ± 0.51
4.133AspAsp: 4.133 ± 1.488
4.287AspGlu: 4.287 ± 0.352
2.296AspPhe: 2.296 ± 0.343
2.449AspGly: 2.449 ± 0.687
1.684AspHis: 1.684 ± 0.801
4.746AspIle: 4.746 ± 0.344
3.674AspLys: 3.674 ± 0.791
5.358AspLeu: 5.358 ± 0.636
1.99AspMet: 1.99 ± 0.468
3.521AspAsn: 3.521 ± 0.717
1.684AspPro: 1.684 ± 0.801
1.378AspGln: 1.378 ± 0.301
1.531AspArg: 1.531 ± 0.707
2.603AspSer: 2.603 ± 0.76
2.909AspThr: 2.909 ± 0.427
4.287AspVal: 4.287 ± 0.352
0.612AspTrp: 0.612 ± 0.187
3.674AspTyr: 3.674 ± 1.269
0.0AspXaa: 0.0 ± 0.0
Glu
3.98GluAla: 3.98 ± 0.976
0.919GluCys: 0.919 ± 1.476
3.827GluAsp: 3.827 ± 0.386
3.368GluGlu: 3.368 ± 1.746
1.837GluPhe: 1.837 ± 0.083
3.062GluGly: 3.062 ± 0.5
3.368GluHis: 3.368 ± 0.311
3.674GluIle: 3.674 ± 1.122
3.215GluLys: 3.215 ± 0.384
7.042GluLeu: 7.042 ± 0.477
2.143GluMet: 2.143 ± 0.063
3.98GluAsn: 3.98 ± 0.02
2.143GluPro: 2.143 ± 1.019
2.449GluGln: 2.449 ± 0.687
2.296GluArg: 2.296 ± 0.136
2.756GluSer: 2.756 ± 0.832
3.674GluThr: 3.674 ± 1.122
3.521GluVal: 3.521 ± 1.673
1.531GluTrp: 1.531 ± 0.707
2.909GluTyr: 2.909 ± 0.905
0.0GluXaa: 0.0 ± 0.0
Phe
0.612PheAla: 0.612 ± 0.291
0.612PheCys: 0.612 ± 0.187
2.603PheAsp: 2.603 ± 1.238
1.99PheGlu: 1.99 ± 0.01
0.612PhePhe: 0.612 ± 0.187
2.296PheGly: 2.296 ± 0.343
0.306PheHis: 0.306 ± 0.146
2.296PheIle: 2.296 ± 0.136
1.99PheLys: 1.99 ± 0.947
1.837PheLeu: 1.837 ± 0.561
1.531PheMet: 1.531 ± 0.946
1.99PheAsn: 1.99 ± 0.967
0.306PhePro: 0.306 ± 0.146
0.306PheGln: 0.306 ± 0.146
1.837PheArg: 1.837 ± 0.083
1.378PheSer: 1.378 ± 0.655
3.368PheThr: 3.368 ± 0.645
0.919PheVal: 0.919 ± 0.52
0.0PheTrp: 0.0 ± 0.0
0.919PheTyr: 0.919 ± 0.437
0.0PheXaa: 0.0 ± 0.0
Gly
3.368GlyAla: 3.368 ± 0.789
0.612GlyCys: 0.612 ± 0.291
2.756GlyAsp: 2.756 ± 1.311
3.521GlyGlu: 3.521 ± 0.238
1.99GlyPhe: 1.99 ± 0.01
3.062GlyGly: 3.062 ± 0.5
1.225GlyHis: 1.225 ± 0.374
3.674GlyIle: 3.674 ± 1.122
3.674GlyLys: 3.674 ± 0.644
6.889GlyLeu: 6.889 ± 1.028
1.072GlyMet: 1.072 ± 0.031
3.062GlyAsn: 3.062 ± 0.457
2.143GlyPro: 2.143 ± 0.541
1.531GlyGln: 1.531 ± 0.25
2.756GlyArg: 2.756 ± 0.354
4.133GlySer: 4.133 ± 0.053
4.746GlyThr: 4.746 ± 1.301
4.287GlyVal: 4.287 ± 0.831
1.225GlyTrp: 1.225 ± 0.104
4.287GlyTyr: 4.287 ± 2.266
0.0GlyXaa: 0.0 ± 0.0
His
2.296HisAla: 2.296 ± 1.092
0.612HisCys: 0.612 ± 0.291
2.909HisAsp: 2.909 ± 0.427
1.684HisGlu: 1.684 ± 0.156
0.612HisPhe: 0.612 ± 0.187
2.909HisGly: 2.909 ± 1.008
1.531HisHis: 1.531 ± 0.728
2.143HisIle: 2.143 ± 0.063
2.603HisLys: 2.603 ± 0.76
2.603HisLeu: 2.603 ± 0.675
1.072HisMet: 1.072 ± 0.031
1.684HisAsn: 1.684 ± 1.112
1.072HisPro: 1.072 ± 0.031
1.225HisGln: 1.225 ± 0.104
1.072HisArg: 1.072 ± 0.031
1.531HisSer: 1.531 ± 1.663
2.603HisThr: 2.603 ± 1.154
1.99HisVal: 1.99 ± 0.947
0.612HisTrp: 0.612 ± 0.291
0.459HisTyr: 0.459 ± 0.218
0.0HisXaa: 0.0 ± 0.0
Ile
3.215IleAla: 3.215 ± 0.862
0.612IleCys: 0.612 ± 0.665
3.98IleAsp: 3.98 ± 0.02
4.746IleGlu: 4.746 ± 0.612
1.684IlePhe: 1.684 ± 0.323
3.215IleGly: 3.215 ± 0.384
2.296IleHis: 2.296 ± 0.136
4.287IleIle: 4.287 ± 2.266
5.511IleLys: 5.511 ± 0.727
4.287IleLeu: 4.287 ± 0.831
2.143IleMet: 2.143 ± 0.415
6.124IleAsn: 6.124 ± 0.435
3.521IlePro: 3.521 ± 1.197
1.225IleGln: 1.225 ± 0.104
3.368IleArg: 3.368 ± 1.746
3.827IleSer: 3.827 ± 1.342
3.827IleThr: 3.827 ± 0.571
4.899IleVal: 4.899 ± 1.852
0.306IleTrp: 0.306 ± 0.146
2.603IleTyr: 2.603 ± 0.197
0.0IleXaa: 0.0 ± 0.0
Lys
4.44LysAla: 4.44 ± 0.199
1.072LysCys: 1.072 ± 0.031
3.215LysAsp: 3.215 ± 0.573
4.899LysGlu: 4.899 ± 0.54
1.684LysPhe: 1.684 ± 1.112
3.521LysGly: 3.521 ± 0.24
2.143LysHis: 2.143 ± 0.541
2.909LysIle: 2.909 ± 0.051
2.603LysLys: 2.603 ± 0.76
6.277LysLeu: 6.277 ± 0.594
2.143LysMet: 2.143 ± 0.063
3.062LysAsn: 3.062 ± 0.935
2.603LysPro: 2.603 ± 0.281
3.368LysGln: 3.368 ± 0.167
2.909LysArg: 2.909 ± 0.051
2.756LysSer: 2.756 ± 0.354
2.756LysThr: 2.756 ± 0.832
3.062LysVal: 3.062 ± 0.935
0.459LysTrp: 0.459 ± 0.26
3.215LysTyr: 3.215 ± 1.051
0.0LysXaa: 0.0 ± 0.0
Leu
7.808LeuAla: 7.808 ± 1.322
0.765LeuCys: 0.765 ± 0.114
3.98LeuAsp: 3.98 ± 0.458
5.511LeuGlu: 5.511 ± 0.708
1.378LeuPhe: 1.378 ± 1.258
6.277LeuGly: 6.277 ± 1.551
2.756LeuHis: 2.756 ± 1.081
6.277LeuIle: 6.277 ± 0.362
5.971LeuLys: 5.971 ± 0.508
6.43LeuLeu: 6.43 ± 2.102
3.521LeuMet: 3.521 ± 0.24
5.664LeuAsn: 5.664 ± 2.089
5.818LeuPro: 5.818 ± 1.332
3.062LeuGln: 3.062 ± 0.022
6.124LeuArg: 6.124 ± 1.392
6.124LeuSer: 6.124 ± 1.478
7.502LeuThr: 7.502 ± 1.215
6.277LeuVal: 6.277 ± 2.029
1.837LeuTrp: 1.837 ± 0.396
2.143LeuTyr: 2.143 ± 0.541
0.0LeuXaa: 0.0 ± 0.0
Met
2.143MetAla: 2.143 ± 0.541
0.306MetCys: 0.306 ± 0.146
1.99MetAsp: 1.99 ± 0.468
2.603MetGlu: 2.603 ± 0.675
0.765MetPhe: 0.765 ± 0.364
2.296MetGly: 2.296 ± 0.614
1.531MetHis: 1.531 ± 0.707
2.909MetIle: 2.909 ± 0.53
1.99MetLys: 1.99 ± 0.468
3.062MetLeu: 3.062 ± 0.978
2.296MetMet: 2.296 ± 0.136
2.296MetAsn: 2.296 ± 0.821
0.919MetPro: 0.919 ± 0.041
0.919MetGln: 0.919 ± 0.437
1.837MetArg: 1.837 ± 0.874
1.225MetSer: 1.225 ± 0.374
2.603MetThr: 2.603 ± 0.197
1.837MetVal: 1.837 ± 0.874
0.306MetTrp: 0.306 ± 0.333
1.378MetTyr: 1.378 ± 0.301
0.0MetXaa: 0.0 ± 0.0
Asn
3.98AsnAla: 3.98 ± 0.02
0.612AsnCys: 0.612 ± 0.187
3.062AsnAsp: 3.062 ± 0.5
3.674AsnGlu: 3.674 ± 0.165
1.072AsnPhe: 1.072 ± 0.925
3.062AsnGly: 3.062 ± 0.935
1.072AsnHis: 1.072 ± 0.447
3.062AsnIle: 3.062 ± 0.5
3.98AsnLys: 3.98 ± 0.458
6.277AsnLeu: 6.277 ± 0.116
1.378AsnMet: 1.378 ± 0.177
3.062AsnAsn: 3.062 ± 0.457
1.531AsnPro: 1.531 ± 0.25
2.603AsnGln: 2.603 ± 1.632
3.98AsnArg: 3.98 ± 2.89
3.062AsnSer: 3.062 ± 1.413
4.287AsnThr: 4.287 ± 1.309
3.98AsnVal: 3.98 ± 0.498
1.072AsnTrp: 1.072 ± 0.447
1.531AsnTyr: 1.531 ± 0.228
0.0AsnXaa: 0.0 ± 0.0
Pro
1.531ProAla: 1.531 ± 0.25
0.919ProCys: 0.919 ± 0.041
1.684ProAsp: 1.684 ± 0.801
3.368ProGlu: 3.368 ± 0.645
1.684ProPhe: 1.684 ± 0.801
3.062ProGly: 3.062 ± 1.892
1.531ProHis: 1.531 ± 0.728
2.603ProIle: 2.603 ± 0.76
2.449ProLys: 2.449 ± 0.27
3.98ProLeu: 3.98 ± 1.415
1.072ProMet: 1.072 ± 0.51
1.378ProAsn: 1.378 ± 0.655
1.225ProPro: 1.225 ± 0.583
1.225ProGln: 1.225 ± 0.583
2.143ProArg: 2.143 ± 0.063
2.909ProSer: 2.909 ± 0.427
2.449ProThr: 2.449 ± 1.165
2.909ProVal: 2.909 ± 0.051
1.072ProTrp: 1.072 ± 0.51
1.99ProTyr: 1.99 ± 0.01
0.0ProXaa: 0.0 ± 0.0
Gln
2.449GlnAla: 2.449 ± 0.209
0.765GlnCys: 0.765 ± 1.071
2.143GlnAsp: 2.143 ± 0.063
1.684GlnGlu: 1.684 ± 0.801
1.072GlnPhe: 1.072 ± 0.031
2.756GlnGly: 2.756 ± 0.832
0.919GlnHis: 0.919 ± 0.041
2.296GlnIle: 2.296 ± 0.136
1.072GlnLys: 1.072 ± 0.51
2.909GlnLeu: 2.909 ± 1.486
1.684GlnMet: 1.684 ± 0.801
0.919GlnAsn: 0.919 ± 0.041
0.765GlnPro: 0.765 ± 0.114
1.531GlnGln: 1.531 ± 0.228
1.225GlnArg: 1.225 ± 0.104
2.296GlnSer: 2.296 ± 1.092
1.684GlnThr: 1.684 ± 1.112
1.837GlnVal: 1.837 ± 0.396
0.765GlnTrp: 0.765 ± 0.114
0.919GlnTyr: 0.919 ± 0.437
0.0GlnXaa: 0.0 ± 0.0
Arg
2.603ArgAla: 2.603 ± 0.76
0.459ArgCys: 0.459 ± 0.738
2.296ArgAsp: 2.296 ± 0.343
2.756ArgGlu: 2.756 ± 0.354
0.765ArgPhe: 0.765 ± 0.364
3.062ArgGly: 3.062 ± 1.892
1.99ArgHis: 1.99 ± 0.488
3.062ArgIle: 3.062 ± 0.5
3.215ArgLys: 3.215 ± 1.051
4.133ArgLeu: 4.133 ± 0.425
1.837ArgMet: 1.837 ± 0.083
2.603ArgAsn: 2.603 ± 2.11
3.521ArgPro: 3.521 ± 0.238
1.99ArgGln: 1.99 ± 0.468
3.215ArgArg: 3.215 ± 0.094
3.521ArgSer: 3.521 ± 0.238
2.143ArgThr: 2.143 ± 0.063
3.368ArgVal: 3.368 ± 0.311
0.612ArgTrp: 0.612 ± 0.187
1.99ArgTyr: 1.99 ± 0.488
0.0ArgXaa: 0.0 ± 0.0
Ser
3.674SerAla: 3.674 ± 0.791
0.765SerCys: 0.765 ± 0.592
3.521SerAsp: 3.521 ± 0.718
3.062SerGlu: 3.062 ± 0.457
1.837SerPhe: 1.837 ± 0.874
3.062SerGly: 3.062 ± 0.457
1.99SerHis: 1.99 ± 0.01
4.899SerIle: 4.899 ± 0.54
3.521SerLys: 3.521 ± 0.238
5.818SerLeu: 5.818 ± 0.103
2.296SerMet: 2.296 ± 0.614
3.062SerAsn: 3.062 ± 0.5
3.368SerPro: 3.368 ± 0.167
1.072SerGln: 1.072 ± 0.447
2.296SerArg: 2.296 ± 0.343
3.062SerSer: 3.062 ± 0.978
5.052SerThr: 5.052 ± 0.49
5.205SerVal: 5.205 ± 1.998
1.99SerTrp: 1.99 ± 0.947
1.378SerTyr: 1.378 ± 0.78
0.0SerXaa: 0.0 ± 0.0
Thr
3.98ThrAla: 3.98 ± 0.498
1.225ThrCys: 1.225 ± 0.374
3.827ThrAsp: 3.827 ± 0.386
3.215ThrGlu: 3.215 ± 0.384
2.603ThrPhe: 2.603 ± 1.238
4.746ThrGly: 4.746 ± 0.612
2.756ThrHis: 2.756 ± 0.602
4.593ThrIle: 4.593 ± 3.077
2.756ThrLys: 2.756 ± 1.081
7.808ThrLeu: 7.808 ± 2.279
2.449ThrMet: 2.449 ± 0.687
4.593ThrAsn: 4.593 ± 0.75
3.674ThrPro: 3.674 ± 0.791
1.837ThrGln: 1.837 ± 0.083
1.837ThrArg: 1.837 ± 0.396
5.205ThrSer: 5.205 ± 0.872
6.583ThrThr: 6.583 ± 0.695
4.133ThrVal: 4.133 ± 0.531
1.072ThrTrp: 1.072 ± 0.447
2.143ThrTyr: 2.143 ± 0.063
0.0ThrXaa: 0.0 ± 0.0
Val
3.98ValAla: 3.98 ± 0.458
0.919ValCys: 0.919 ± 0.998
3.215ValAsp: 3.215 ± 0.862
3.98ValGlu: 3.98 ± 0.02
2.756ValPhe: 2.756 ± 0.354
3.827ValGly: 3.827 ± 0.386
1.837ValHis: 1.837 ± 0.874
4.899ValIle: 4.899 ± 0.895
2.603ValLys: 2.603 ± 0.281
5.052ValLeu: 5.052 ± 0.968
1.531ValMet: 1.531 ± 0.707
2.449ValAsn: 2.449 ± 0.687
2.909ValPro: 2.909 ± 0.051
2.296ValGln: 2.296 ± 0.343
4.133ValArg: 4.133 ± 1.01
4.593ValSer: 4.593 ± 1.228
5.358ValThr: 5.358 ± 0.157
3.368ValVal: 3.368 ± 1.268
0.765ValTrp: 0.765 ± 0.592
2.909ValTyr: 2.909 ± 0.051
0.0ValXaa: 0.0 ± 0.0
Trp
1.225TrpAla: 1.225 ± 0.104
0.153TrpCys: 0.153 ± 0.405
0.612TrpAsp: 0.612 ± 0.665
1.072TrpGlu: 1.072 ± 0.925
1.072TrpPhe: 1.072 ± 0.031
0.612TrpGly: 0.612 ± 0.187
0.612TrpHis: 0.612 ± 0.187
0.919TrpIle: 0.919 ± 0.437
0.765TrpLys: 0.765 ± 0.114
1.531TrpLeu: 1.531 ± 0.25
0.612TrpMet: 0.612 ± 0.291
0.765TrpAsn: 0.765 ± 0.114
0.459TrpPro: 0.459 ± 0.218
0.306TrpGln: 0.306 ± 0.146
1.531TrpArg: 1.531 ± 0.25
1.072TrpSer: 1.072 ± 0.51
0.919TrpThr: 0.919 ± 0.041
0.919TrpVal: 0.919 ± 0.041
0.306TrpTrp: 0.306 ± 0.146
0.459TrpTyr: 0.459 ± 0.26
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.99TyrAla: 1.99 ± 0.488
0.919TyrCys: 0.919 ± 0.437
2.449TyrAsp: 2.449 ± 0.209
2.756TyrGlu: 2.756 ± 1.559
0.612TyrPhe: 0.612 ± 0.291
2.296TyrGly: 2.296 ± 1.777
1.378TyrHis: 1.378 ± 0.301
1.531TyrIle: 1.531 ± 0.25
2.909TyrLys: 2.909 ± 0.051
5.205TyrLeu: 5.205 ± 0.563
1.225TyrMet: 1.225 ± 0.583
2.143TyrAsn: 2.143 ± 0.894
0.919TyrPro: 0.919 ± 0.437
0.919TyrGln: 0.919 ± 0.437
1.684TyrArg: 1.684 ± 0.323
2.449TyrSer: 2.449 ± 0.209
2.909TyrThr: 2.909 ± 0.53
2.143TyrVal: 2.143 ± 0.541
0.765TyrTrp: 0.765 ± 0.364
1.684TyrTyr: 1.684 ± 0.323
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (6533 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski