Sinomonas atrocyanea

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Sinomonas

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4104 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A126ZXV7|A0A126ZXV7_9MICC 5-carboxymethyl-2-hydroxymuconate delta-isomerase OS=Sinomonas atrocyanea OX=37927 GN=SA2016_1328 PE=4 SV=1
MM1 pKa = 7.46SKK3 pKa = 9.95VQTGLRR9 pKa = 11.84YY10 pKa = 9.56SEE12 pKa = 3.92EE13 pKa = 4.39HH14 pKa = 6.05EE15 pKa = 4.34WLDD18 pKa = 3.86TDD20 pKa = 5.01AAPAKK25 pKa = 10.26IGVSQVAADD34 pKa = 3.67ALGDD38 pKa = 3.87VVYY41 pKa = 11.05LDD43 pKa = 4.31LPEE46 pKa = 5.62AGSTVSAGQTCGEE59 pKa = 4.14IEE61 pKa = 4.32STKK64 pKa = 10.64SVSDD68 pKa = 4.02LYY70 pKa = 11.42SPVSGTVVEE79 pKa = 4.83VNQEE83 pKa = 4.38AIDD86 pKa = 4.04NPALVNEE93 pKa = 4.6DD94 pKa = 3.86PYY96 pKa = 11.2GAGWLFTVEE105 pKa = 4.15VSEE108 pKa = 4.65EE109 pKa = 4.41GPLMSAEE116 pKa = 4.25EE117 pKa = 4.12YY118 pKa = 10.43AGKK121 pKa = 10.26NGGEE125 pKa = 4.13LL126 pKa = 3.47

Molecular weight: 13.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A127A218|A0A127A218_9MICC Putative cold shock protein OS=Sinomonas atrocyanea OX=37927 GN=SA2016_1007 PE=4 SV=1
MM1 pKa = 7.61KK2 pKa = 10.31VRR4 pKa = 11.84NSLRR8 pKa = 11.84ALKK11 pKa = 9.68KK12 pKa = 9.79VPGAQVVRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84GRR24 pKa = 11.84TFVINKK30 pKa = 9.04RR31 pKa = 11.84SPRR34 pKa = 11.84LSARR38 pKa = 11.84QGG40 pKa = 3.13

Molecular weight: 4.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4104

0

4104

1325928

29

2174

323.1

34.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.516 ± 0.054

0.637 ± 0.01

5.437 ± 0.031

5.743 ± 0.042

3.026 ± 0.024

9.57 ± 0.034

2.15 ± 0.018

3.801 ± 0.027

2.148 ± 0.025

10.183 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.82 ± 0.014

1.895 ± 0.02

5.795 ± 0.031

2.891 ± 0.02

7.287 ± 0.042

5.506 ± 0.032

5.607 ± 0.041

8.481 ± 0.04

1.471 ± 0.016

2.037 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski