Prevotella sp. BP1-145

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; unclassified Prevotella

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2923 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H0HZN4|A0A1H0HZN4_9BACT Uncharacterized protein OS=Prevotella sp. BP1-145 OX=645273 GN=SAMN04487900_11287 PE=4 SV=1
MM1 pKa = 7.38NATIVIYY8 pKa = 10.41GSSTGTCEE16 pKa = 5.07AIAEE20 pKa = 4.44KK21 pKa = 10.28IASKK25 pKa = 10.55LGCEE29 pKa = 4.13ALNVQDD35 pKa = 4.05LTADD39 pKa = 3.1IVNANQNLILGTSTWGAGEE58 pKa = 4.8LQDD61 pKa = 5.15DD62 pKa = 4.74WYY64 pKa = 10.86DD65 pKa = 3.62GLNTLKK71 pKa = 10.89ACDD74 pKa = 4.13LSGKK78 pKa = 8.63TIALFGCGDD87 pKa = 4.25CSCYY91 pKa = 10.67SDD93 pKa = 3.84TFVGGIGEE101 pKa = 5.02LYY103 pKa = 10.83NGIKK107 pKa = 10.58GSGAKK112 pKa = 10.3FIGSVEE118 pKa = 3.99TDD120 pKa = 3.29GYY122 pKa = 9.9TFDD125 pKa = 5.37DD126 pKa = 4.16SEE128 pKa = 4.27AVIDD132 pKa = 4.37GKK134 pKa = 11.16FIGLPLDD141 pKa = 5.07DD142 pKa = 4.83VNEE145 pKa = 4.29DD146 pKa = 3.44DD147 pKa = 4.29KK148 pKa = 11.77TDD150 pKa = 3.3VRR152 pKa = 11.84IDD154 pKa = 2.95AWIAAISPEE163 pKa = 4.03LL164 pKa = 3.61

Molecular weight: 17.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H0HTP7|A0A1H0HTP7_9BACT Cell fate regulator YaaT PSP1 superfamily (Controls sporulation competence biofilm development) OS=Prevotella sp. BP1-145 OX=645273 GN=SAMN04487900_1126 PE=4 SV=1
MM1 pKa = 7.85PNGKK5 pKa = 9.19KK6 pKa = 10.25KK7 pKa = 10.12KK8 pKa = 7.0GHH10 pKa = 6.14KK11 pKa = 9.06MATHH15 pKa = 6.13KK16 pKa = 10.39RR17 pKa = 11.84KK18 pKa = 9.84KK19 pKa = 9.28RR20 pKa = 11.84LRR22 pKa = 11.84KK23 pKa = 9.25NRR25 pKa = 11.84HH26 pKa = 4.69KK27 pKa = 11.1SKK29 pKa = 11.1

Molecular weight: 3.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2923

0

2923

1088372

26

5780

372.3

41.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.407 ± 0.048

1.334 ± 0.017

5.997 ± 0.028

6.417 ± 0.041

4.228 ± 0.029

6.971 ± 0.046

2.057 ± 0.021

6.388 ± 0.039

6.293 ± 0.04

8.703 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.965 ± 0.024

4.927 ± 0.037

3.671 ± 0.023

3.943 ± 0.029

4.681 ± 0.035

5.842 ± 0.037

5.957 ± 0.049

6.557 ± 0.035

1.332 ± 0.02

4.331 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski