Carideicomes alvinocaridis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Carideicomes

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5316 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7G3D880|A0A7G3D880_9RHOB Glycosyltransferase OS=Carideicomes alvinocaridis OX=2541728 GN=E0K89_019375 PE=4 SV=1
MM1 pKa = 8.04CDD3 pKa = 3.46QISDD7 pKa = 4.85AILDD11 pKa = 4.81AILAADD17 pKa = 4.7PSAKK21 pKa = 10.22VAVEE25 pKa = 3.94TLTTTGLVQVAGEE38 pKa = 4.56VNTSAYY44 pKa = 10.72VEE46 pKa = 4.02IPRR49 pKa = 11.84IVRR52 pKa = 11.84EE53 pKa = 4.08TILDD57 pKa = 3.28IGYY60 pKa = 10.22DD61 pKa = 3.42SSANGFDD68 pKa = 3.99GAQCGVNISIGQQSSDD84 pKa = 2.43IFAGVSRR91 pKa = 11.84SLEE94 pKa = 3.61ARR96 pKa = 11.84EE97 pKa = 3.95YY98 pKa = 11.15GSADD102 pKa = 3.36EE103 pKa = 4.86VDD105 pKa = 3.51EE106 pKa = 5.03QGAGDD111 pKa = 3.63QGIMFGYY118 pKa = 8.98ATDD121 pKa = 3.59EE122 pKa = 4.45TPAYY126 pKa = 9.28MPMPIYY132 pKa = 10.2LAHH135 pKa = 7.2RR136 pKa = 11.84LSEE139 pKa = 4.14

Molecular weight: 14.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7G3D944|A0A7G3D944_9RHOB DUF3093 family protein (Fragment) OS=Carideicomes alvinocaridis OX=2541728 GN=E0K89_025975 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.79HH17 pKa = 5.67RR18 pKa = 11.84KK19 pKa = 8.31LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5316

0

5316

1503426

22

4349

282.8

30.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.577 ± 0.05

0.832 ± 0.012

5.985 ± 0.033

6.612 ± 0.034

3.497 ± 0.019

8.994 ± 0.036

2.076 ± 0.018

4.611 ± 0.028

2.66 ± 0.03

10.309 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.691 ± 0.019

2.211 ± 0.017

5.35 ± 0.029

2.981 ± 0.019

7.493 ± 0.043

4.958 ± 0.024

5.257 ± 0.031

7.303 ± 0.029

1.413 ± 0.013

2.168 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski