Clostridium cadaveris

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes;

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3342 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I2L082|A0A1I2L082_9CLOT GntR family transcriptional regulator OS=Clostridium cadaveris OX=1529 GN=DBY38_14805 PE=4 SV=1
MM1 pKa = 6.53VAAVATCVLLVGGSTVAYY19 pKa = 9.84AADD22 pKa = 3.53LGGIQRR28 pKa = 11.84IVQLWIHH35 pKa = 5.95GDD37 pKa = 3.3KK38 pKa = 10.93TEE40 pKa = 4.03VSIDD44 pKa = 3.68FNSDD48 pKa = 2.22GSYY51 pKa = 11.63DD52 pKa = 3.44MEE54 pKa = 5.22YY55 pKa = 10.94YY56 pKa = 10.67DD57 pKa = 4.63NKK59 pKa = 11.0GNVIQEE65 pKa = 4.28SGGGVASNLNGSEE78 pKa = 4.04RR79 pKa = 11.84PITEE83 pKa = 4.57DD84 pKa = 3.25EE85 pKa = 4.85LMDD88 pKa = 4.66HH89 pKa = 7.15LDD91 pKa = 4.0DD92 pKa = 5.09PEE94 pKa = 3.94VRR96 pKa = 11.84YY97 pKa = 8.9EE98 pKa = 3.83

Molecular weight: 10.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I2JIU3|A0A1I2JIU3_9CLOT P-type Ca(2+) transporter OS=Clostridium cadaveris OX=1529 GN=DBY38_13050 PE=4 SV=1
MM1 pKa = 7.33SRR3 pKa = 11.84KK4 pKa = 9.54CEE6 pKa = 3.93YY7 pKa = 9.77CDD9 pKa = 3.38KK10 pKa = 11.16GVISGVQYY18 pKa = 10.79SHH20 pKa = 6.38SHH22 pKa = 5.36RR23 pKa = 11.84QSKK26 pKa = 10.2RR27 pKa = 11.84KK28 pKa = 7.58WAPNIKK34 pKa = 9.44RR35 pKa = 11.84VKK37 pKa = 10.27AIVNGTPKK45 pKa = 9.69TVHH48 pKa = 4.9VCTRR52 pKa = 11.84CLRR55 pKa = 11.84SGKK58 pKa = 7.37VQRR61 pKa = 11.84AII63 pKa = 3.7

Molecular weight: 7.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3342

0

3342

1031823

26

2909

308.7

34.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.821 ± 0.046

1.243 ± 0.019

5.66 ± 0.035

7.491 ± 0.053

4.363 ± 0.034

6.602 ± 0.039

1.381 ± 0.017

9.711 ± 0.047

8.939 ± 0.043

8.963 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.829 ± 0.02

5.997 ± 0.041

2.834 ± 0.021

2.195 ± 0.02

3.404 ± 0.028

6.362 ± 0.035

4.937 ± 0.033

6.512 ± 0.036

0.667 ± 0.013

4.091 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski