Halovirus HVTV-1

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses; Haloviruses

Average proteome isoelectric point is 4.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 173 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L7TNT9|L7TNT9_9VIRU LAGLIDADG_2 domain-containing protein OS=Halovirus HVTV-1 OX=1262528 GN=143 PE=4 SV=1
MM1 pKa = 7.15VKK3 pKa = 9.0STFTFEE9 pKa = 3.6EE10 pKa = 5.24GEE12 pKa = 4.32AIDD15 pKa = 3.83VGGHH19 pKa = 5.62GEE21 pKa = 3.8HH22 pKa = 7.61DD23 pKa = 3.94YY24 pKa = 11.31VFEE27 pKa = 4.72SGEE30 pKa = 4.17PVTDD34 pKa = 3.39SGISSLVFEE43 pKa = 5.24SGTGLGGGQLQYY55 pKa = 10.59EE56 pKa = 4.51INGGGLNTLEE66 pKa = 4.42TIKK69 pKa = 9.89TAEE72 pKa = 4.06PHH74 pKa = 5.74YY75 pKa = 10.67KK76 pKa = 10.32FYY78 pKa = 11.18DD79 pKa = 4.21ADD81 pKa = 3.77LTDD84 pKa = 3.75NNFDD88 pKa = 3.48GSQTVEE94 pKa = 3.62ADD96 pKa = 2.57HH97 pKa = 7.04GYY99 pKa = 10.41FYY101 pKa = 10.77DD102 pKa = 4.12ARR104 pKa = 11.84TLTVLAHH111 pKa = 6.74EE112 pKa = 4.43NTNTGSIAIIFTYY125 pKa = 10.64AEE127 pKa = 4.09PTTPIDD133 pKa = 3.5EE134 pKa = 4.99EE135 pKa = 4.4YY136 pKa = 11.14DD137 pKa = 3.66NQVDD141 pKa = 4.46FSTSVSVPTYY151 pKa = 9.4AAVWDD156 pKa = 4.52GEE158 pKa = 4.38ANDD161 pKa = 4.1EE162 pKa = 4.63SIGDD166 pKa = 3.72VFEE169 pKa = 4.11STRR172 pKa = 11.84AKK174 pKa = 10.59NGVSIGTTDD183 pKa = 3.47GFGLITDD190 pKa = 4.69GFSDD194 pKa = 3.9ITFTCNPDD202 pKa = 2.89VSHH205 pKa = 7.16PKK207 pKa = 10.54VGDD210 pKa = 3.58DD211 pKa = 3.51QLEE214 pKa = 4.03VDD216 pKa = 3.79PEE218 pKa = 4.16GWRR221 pKa = 11.84LITEE225 pKa = 4.82EE226 pKa = 4.99GPPPDD231 pKa = 3.68GGAYY235 pKa = 9.34EE236 pKa = 4.85WIDD239 pKa = 3.47QSSSMAGSLRR249 pKa = 11.84IVSSS253 pKa = 3.47

Molecular weight: 27.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L7THS3|L7THS3_9VIRU Ribonucleoside-diphosphate reductase OS=Halovirus HVTV-1 OX=1262528 GN=21 PE=3 SV=1
MM1 pKa = 6.97TPEE4 pKa = 4.51EE5 pKa = 4.48KK6 pKa = 9.93RR7 pKa = 11.84HH8 pKa = 4.13MWLRR12 pKa = 11.84LHH14 pKa = 6.84WDD16 pKa = 3.55VPPTTSRR23 pKa = 11.84KK24 pKa = 8.67KK25 pKa = 10.33EE26 pKa = 3.46FWEE29 pKa = 4.47RR30 pKa = 11.84YY31 pKa = 5.28MRR33 pKa = 11.84TRR35 pKa = 11.84RR36 pKa = 3.46

Molecular weight: 4.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

173

0

173

32349

25

1313

187.0

21.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.801 ± 0.188

1.135 ± 0.113

9.935 ± 0.314

10.541 ± 0.339

3.125 ± 0.106

7.329 ± 0.219

2.3 ± 0.123

3.994 ± 0.12

3.988 ± 0.144

6.727 ± 0.172

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.501 ± 0.086

3.765 ± 0.115

3.898 ± 0.142

3.53 ± 0.125

6.022 ± 0.165

6.121 ± 0.17

5.722 ± 0.207

7.354 ± 0.15

1.799 ± 0.079

3.413 ± 0.104
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski