Lynx rufus papillomavirus type 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Lambdapapillomavirus; Lambdapapillomavirus 1

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I6LEI4|I6LEI4_9PAPI Replication protein E1 OS=Lynx rufus papillomavirus type 1 OX=323364 GN=E1 PE=3 SV=1
MM1 pKa = 7.47IGSAPTISDD10 pKa = 3.01IVLTEE15 pKa = 4.04QPPEE19 pKa = 4.05TADD22 pKa = 3.47LRR24 pKa = 11.84CYY26 pKa = 10.27EE27 pKa = 3.95QMPDD31 pKa = 3.42EE32 pKa = 4.94EE33 pKa = 4.61EE34 pKa = 4.5VEE36 pKa = 4.39SQSRR40 pKa = 11.84DD41 pKa = 3.4LYY43 pKa = 10.75RR44 pKa = 11.84VSALCGLCGGGVRR57 pKa = 11.84FACLSGSEE65 pKa = 4.4DD66 pKa = 3.22ILRR69 pKa = 11.84LRR71 pKa = 11.84SLLDD75 pKa = 3.81TIQVVCVTCVKK86 pKa = 10.22NQKK89 pKa = 9.66LNHH92 pKa = 6.28GGG94 pKa = 3.31

Molecular weight: 10.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I6LEI6|I6LEI6_9PAPI E4 protein (Fragment) OS=Lynx rufus papillomavirus type 1 OX=323364 GN=E4 PE=4 SV=1
MM1 pKa = 7.91DD2 pKa = 5.94NISKK6 pKa = 10.47ALEE9 pKa = 4.17SVQEE13 pKa = 4.05QLLTLYY19 pKa = 10.47EE20 pKa = 4.5RR21 pKa = 11.84DD22 pKa = 3.78STDD25 pKa = 2.96LTDD28 pKa = 5.84QIKK31 pKa = 9.44HH32 pKa = 4.09WQLNRR37 pKa = 11.84RR38 pKa = 11.84EE39 pKa = 3.9QALYY43 pKa = 10.0YY44 pKa = 9.63CARR47 pKa = 11.84RR48 pKa = 11.84QGITRR53 pKa = 11.84VGMNVVPSLAASQQRR68 pKa = 11.84AKK70 pKa = 10.78SAIEE74 pKa = 3.94QEE76 pKa = 4.57LLLQSLLDD84 pKa = 3.56SDD86 pKa = 5.31FADD89 pKa = 4.58EE90 pKa = 4.77PWSLMDD96 pKa = 3.43TSRR99 pKa = 11.84EE100 pKa = 3.78RR101 pKa = 11.84LLADD105 pKa = 3.94PPYY108 pKa = 9.84CFKK111 pKa = 11.07KK112 pKa = 10.61GGQQVEE118 pKa = 4.01LRR120 pKa = 11.84YY121 pKa = 10.66DD122 pKa = 3.51RR123 pKa = 11.84DD124 pKa = 3.34RR125 pKa = 11.84DD126 pKa = 3.53NTSRR130 pKa = 11.84HH131 pKa = 5.21VLWKK135 pKa = 10.39DD136 pKa = 2.87IYY138 pKa = 10.73FQGEE142 pKa = 3.66EE143 pKa = 4.05DD144 pKa = 3.44TWRR147 pKa = 11.84KK148 pKa = 6.47THH150 pKa = 5.71GQVDD154 pKa = 4.31EE155 pKa = 4.99KK156 pKa = 11.48GLFYY160 pKa = 10.72TDD162 pKa = 3.54DD163 pKa = 4.19KK164 pKa = 11.59GVKK167 pKa = 7.79TYY169 pKa = 10.64YY170 pKa = 10.73VEE172 pKa = 4.5FEE174 pKa = 3.94KK175 pKa = 10.95EE176 pKa = 3.47AAKK179 pKa = 10.4FSKK182 pKa = 8.94TGHH185 pKa = 5.82YY186 pKa = 10.02EE187 pKa = 3.99VVSNLTTPVPTSTTTAAGLGHH208 pKa = 5.88STSPGWATASGPPKK222 pKa = 10.29KK223 pKa = 9.94PSPAKK228 pKa = 9.69KK229 pKa = 9.04RR230 pKa = 11.84KK231 pKa = 9.18RR232 pKa = 11.84PIRR235 pKa = 11.84LSSPKK240 pKa = 9.8TPRR243 pKa = 11.84TGQRR247 pKa = 11.84RR248 pKa = 11.84RR249 pKa = 11.84RR250 pKa = 11.84QGEE253 pKa = 3.79RR254 pKa = 11.84AATSTPLPRR263 pKa = 11.84PTPPSPEE270 pKa = 3.71EE271 pKa = 3.88VGRR274 pKa = 11.84LTSSVPRR281 pKa = 11.84QPGTRR286 pKa = 11.84LGRR289 pKa = 11.84LLHH292 pKa = 6.82DD293 pKa = 4.2ARR295 pKa = 11.84DD296 pKa = 3.79PPVLVLRR303 pKa = 11.84GDD305 pKa = 3.88ANSLKK310 pKa = 10.32CIRR313 pKa = 11.84YY314 pKa = 8.57RR315 pKa = 11.84LKK317 pKa = 10.93GKK319 pKa = 10.63YY320 pKa = 9.48SDD322 pKa = 3.69LFCRR326 pKa = 11.84VSTTWTWTSPTGTDD340 pKa = 2.13RR341 pKa = 11.84WGRR344 pKa = 11.84SRR346 pKa = 11.84MLLTFRR352 pKa = 11.84DD353 pKa = 3.81LSQRR357 pKa = 11.84DD358 pKa = 3.54TFEE361 pKa = 3.83RR362 pKa = 11.84TVRR365 pKa = 11.84LPKK368 pKa = 10.14SVQAFRR374 pKa = 11.84GSFEE378 pKa = 5.16DD379 pKa = 4.07YY380 pKa = 11.26

Molecular weight: 43.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2337

94

608

333.9

37.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.905 ± 0.556

2.396 ± 0.887

6.29 ± 0.385

6.033 ± 0.367

4.108 ± 0.463

6.376 ± 0.521

1.797 ± 0.281

3.38 ± 0.706

4.792 ± 0.782

9.756 ± 0.796

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.54 ± 0.3

3.38 ± 0.826

7.06 ± 1.488

5.178 ± 0.228

7.274 ± 0.851

7.231 ± 0.859

6.333 ± 0.879

6.932 ± 0.907

1.369 ± 0.411

2.867 ± 0.392
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski