Amino acid dipepetide frequency for Rhizoctonia solani endornavirus 2

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.421AlaAla: 3.421 ± 0.0
0.95AlaCys: 0.95 ± 0.0
2.091AlaAsp: 2.091 ± 0.0
3.992AlaGlu: 3.992 ± 0.0
0.38AlaPhe: 0.38 ± 0.0
2.281AlaGly: 2.281 ± 0.0
1.14AlaHis: 1.14 ± 0.0
3.041AlaIle: 3.041 ± 0.0
4.372AlaLys: 4.372 ± 0.0
5.132AlaLeu: 5.132 ± 0.0
2.281AlaMet: 2.281 ± 0.0
2.661AlaAsn: 2.661 ± 0.0
1.521AlaPro: 1.521 ± 0.0
1.521AlaGln: 1.521 ± 0.0
2.661AlaArg: 2.661 ± 0.0
4.562AlaSer: 4.562 ± 0.0
3.041AlaThr: 3.041 ± 0.0
3.231AlaVal: 3.231 ± 0.0
1.901AlaTrp: 1.901 ± 0.0
2.091AlaTyr: 2.091 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.95CysAla: 0.95 ± 0.0
1.521CysCys: 1.521 ± 0.0
1.711CysAsp: 1.711 ± 0.0
0.76CysGlu: 0.76 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.711CysGly: 1.711 ± 0.0
0.57CysHis: 0.57 ± 0.0
0.19CysIle: 0.19 ± 0.0
1.331CysLys: 1.331 ± 0.0
2.661CysLeu: 2.661 ± 0.0
0.76CysMet: 0.76 ± 0.0
1.14CysAsn: 1.14 ± 0.0
0.95CysPro: 0.95 ± 0.0
0.19CysGln: 0.19 ± 0.0
1.331CysArg: 1.331 ± 0.0
0.95CysSer: 0.95 ± 0.0
0.95CysThr: 0.95 ± 0.0
0.76CysVal: 0.76 ± 0.0
0.38CysTrp: 0.38 ± 0.0
0.57CysTyr: 0.57 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.182AspAla: 4.182 ± 0.0
1.711AspCys: 1.711 ± 0.0
4.752AspAsp: 4.752 ± 0.0
5.892AspGlu: 5.892 ± 0.0
3.231AspPhe: 3.231 ± 0.0
2.471AspGly: 2.471 ± 0.0
1.14AspHis: 1.14 ± 0.0
3.041AspIle: 3.041 ± 0.0
3.802AspLys: 3.802 ± 0.0
4.942AspLeu: 4.942 ± 0.0
2.281AspMet: 2.281 ± 0.0
4.182AspAsn: 4.182 ± 0.0
2.471AspPro: 2.471 ± 0.0
2.091AspGln: 2.091 ± 0.0
2.091AspArg: 2.091 ± 0.0
3.802AspSer: 3.802 ± 0.0
4.752AspThr: 4.752 ± 0.0
5.132AspVal: 5.132 ± 0.0
1.14AspTrp: 1.14 ± 0.0
2.661AspTyr: 2.661 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.041GluAla: 3.041 ± 0.0
2.851GluCys: 2.851 ± 0.0
3.802GluAsp: 3.802 ± 0.0
3.421GluGlu: 3.421 ± 0.0
2.471GluPhe: 2.471 ± 0.0
2.471GluGly: 2.471 ± 0.0
2.471GluHis: 2.471 ± 0.0
3.992GluIle: 3.992 ± 0.0
5.702GluLys: 5.702 ± 0.0
5.132GluLeu: 5.132 ± 0.0
3.611GluMet: 3.611 ± 0.0
2.091GluAsn: 2.091 ± 0.0
3.041GluPro: 3.041 ± 0.0
2.471GluGln: 2.471 ± 0.0
2.281GluArg: 2.281 ± 0.0
4.182GluSer: 4.182 ± 0.0
3.041GluThr: 3.041 ± 0.0
4.942GluVal: 4.942 ± 0.0
1.14GluTrp: 1.14 ± 0.0
2.091GluTyr: 2.091 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.331PheAla: 1.331 ± 0.0
0.38PheCys: 0.38 ± 0.0
3.802PheAsp: 3.802 ± 0.0
3.231PheGlu: 3.231 ± 0.0
1.711PhePhe: 1.711 ± 0.0
1.901PheGly: 1.901 ± 0.0
0.57PheHis: 0.57 ± 0.0
2.091PheIle: 2.091 ± 0.0
2.851PheLys: 2.851 ± 0.0
1.901PheLeu: 1.901 ± 0.0
0.76PheMet: 0.76 ± 0.0
1.901PheAsn: 1.901 ± 0.0
0.76PhePro: 0.76 ± 0.0
0.38PheGln: 0.38 ± 0.0
1.521PheArg: 1.521 ± 0.0
3.421PheSer: 3.421 ± 0.0
3.041PheThr: 3.041 ± 0.0
2.471PheVal: 2.471 ± 0.0
0.19PheTrp: 0.19 ± 0.0
0.76PheTyr: 0.76 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.661GlyAla: 2.661 ± 0.0
0.19GlyCys: 0.19 ± 0.0
2.851GlyAsp: 2.851 ± 0.0
4.182GlyGlu: 4.182 ± 0.0
1.901GlyPhe: 1.901 ± 0.0
4.752GlyGly: 4.752 ± 0.0
1.331GlyHis: 1.331 ± 0.0
3.041GlyIle: 3.041 ± 0.0
6.082GlyLys: 6.082 ± 0.0
4.182GlyLeu: 4.182 ± 0.0
1.711GlyMet: 1.711 ± 0.0
1.521GlyAsn: 1.521 ± 0.0
2.281GlyPro: 2.281 ± 0.0
0.76GlyGln: 0.76 ± 0.0
3.231GlyArg: 3.231 ± 0.0
3.611GlySer: 3.611 ± 0.0
3.231GlyThr: 3.231 ± 0.0
3.992GlyVal: 3.992 ± 0.0
0.76GlyTrp: 0.76 ± 0.0
1.14GlyTyr: 1.14 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.14HisAla: 1.14 ± 0.0
0.76HisCys: 0.76 ± 0.0
1.711HisAsp: 1.711 ± 0.0
1.331HisGlu: 1.331 ± 0.0
0.57HisPhe: 0.57 ± 0.0
0.57HisGly: 0.57 ± 0.0
0.76HisHis: 0.76 ± 0.0
1.521HisIle: 1.521 ± 0.0
1.901HisLys: 1.901 ± 0.0
2.091HisLeu: 2.091 ± 0.0
0.76HisMet: 0.76 ± 0.0
1.901HisAsn: 1.901 ± 0.0
0.76HisPro: 0.76 ± 0.0
0.19HisGln: 0.19 ± 0.0
0.57HisArg: 0.57 ± 0.0
2.471HisSer: 2.471 ± 0.0
3.041HisThr: 3.041 ± 0.0
1.331HisVal: 1.331 ± 0.0
0.76HisTrp: 0.76 ± 0.0
0.95HisTyr: 0.95 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.231IleAla: 3.231 ± 0.0
0.95IleCys: 0.95 ± 0.0
5.322IleAsp: 5.322 ± 0.0
3.992IleGlu: 3.992 ± 0.0
0.95IlePhe: 0.95 ± 0.0
5.322IleGly: 5.322 ± 0.0
0.76IleHis: 0.76 ± 0.0
1.331IleIle: 1.331 ± 0.0
3.041IleLys: 3.041 ± 0.0
4.372IleLeu: 4.372 ± 0.0
1.521IleMet: 1.521 ± 0.0
4.942IleAsn: 4.942 ± 0.0
1.711IlePro: 1.711 ± 0.0
1.711IleGln: 1.711 ± 0.0
2.281IleArg: 2.281 ± 0.0
3.992IleSer: 3.992 ± 0.0
3.421IleThr: 3.421 ± 0.0
3.802IleVal: 3.802 ± 0.0
0.95IleTrp: 0.95 ± 0.0
2.281IleTyr: 2.281 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.231LysAla: 3.231 ± 0.0
0.19LysCys: 0.19 ± 0.0
4.372LysAsp: 4.372 ± 0.0
4.182LysGlu: 4.182 ± 0.0
5.512LysPhe: 5.512 ± 0.0
3.992LysGly: 3.992 ± 0.0
0.76LysHis: 0.76 ± 0.0
4.752LysIle: 4.752 ± 0.0
3.421LysLys: 3.421 ± 0.0
9.314LysLeu: 9.314 ± 0.0
2.281LysMet: 2.281 ± 0.0
4.562LysAsn: 4.562 ± 0.0
2.851LysPro: 2.851 ± 0.0
2.281LysGln: 2.281 ± 0.0
4.182LysArg: 4.182 ± 0.0
4.752LysSer: 4.752 ± 0.0
3.992LysThr: 3.992 ± 0.0
6.082LysVal: 6.082 ± 0.0
0.95LysTrp: 0.95 ± 0.0
3.611LysTyr: 3.611 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
4.752LeuAla: 4.752 ± 0.0
1.14LeuCys: 1.14 ± 0.0
5.702LeuAsp: 5.702 ± 0.0
5.702LeuGlu: 5.702 ± 0.0
3.421LeuPhe: 3.421 ± 0.0
4.372LeuGly: 4.372 ± 0.0
2.851LeuHis: 2.851 ± 0.0
7.223LeuIle: 7.223 ± 0.0
6.273LeuLys: 6.273 ± 0.0
5.892LeuLeu: 5.892 ± 0.0
2.091LeuMet: 2.091 ± 0.0
7.793LeuAsn: 7.793 ± 0.0
3.421LeuPro: 3.421 ± 0.0
2.091LeuGln: 2.091 ± 0.0
3.231LeuArg: 3.231 ± 0.0
5.132LeuSer: 5.132 ± 0.0
5.702LeuThr: 5.702 ± 0.0
5.892LeuVal: 5.892 ± 0.0
1.14LeuTrp: 1.14 ± 0.0
3.992LeuTyr: 3.992 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.14MetAla: 1.14 ± 0.0
0.19MetCys: 0.19 ± 0.0
1.331MetAsp: 1.331 ± 0.0
3.041MetGlu: 3.041 ± 0.0
1.14MetPhe: 1.14 ± 0.0
1.331MetGly: 1.331 ± 0.0
0.57MetHis: 0.57 ± 0.0
1.521MetIle: 1.521 ± 0.0
2.091MetLys: 2.091 ± 0.0
3.231MetLeu: 3.231 ± 0.0
1.331MetMet: 1.331 ± 0.0
2.661MetAsn: 2.661 ± 0.0
1.14MetPro: 1.14 ± 0.0
1.14MetGln: 1.14 ± 0.0
1.711MetArg: 1.711 ± 0.0
2.471MetSer: 2.471 ± 0.0
1.711MetThr: 1.711 ± 0.0
2.851MetVal: 2.851 ± 0.0
0.19MetTrp: 0.19 ± 0.0
0.57MetTyr: 0.57 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.041AsnAla: 3.041 ± 0.0
2.471AsnCys: 2.471 ± 0.0
4.942AsnAsp: 4.942 ± 0.0
3.611AsnGlu: 3.611 ± 0.0
1.521AsnPhe: 1.521 ± 0.0
2.851AsnGly: 2.851 ± 0.0
2.091AsnHis: 2.091 ± 0.0
3.802AsnIle: 3.802 ± 0.0
5.512AsnLys: 5.512 ± 0.0
5.132AsnLeu: 5.132 ± 0.0
2.661AsnMet: 2.661 ± 0.0
4.182AsnAsn: 4.182 ± 0.0
2.281AsnPro: 2.281 ± 0.0
1.521AsnGln: 1.521 ± 0.0
2.281AsnArg: 2.281 ± 0.0
3.802AsnSer: 3.802 ± 0.0
5.322AsnThr: 5.322 ± 0.0
3.992AsnVal: 3.992 ± 0.0
0.38AsnTrp: 0.38 ± 0.0
1.521AsnTyr: 1.521 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.331ProAla: 1.331 ± 0.0
0.38ProCys: 0.38 ± 0.0
1.711ProAsp: 1.711 ± 0.0
2.471ProGlu: 2.471 ± 0.0
1.711ProPhe: 1.711 ± 0.0
1.521ProGly: 1.521 ± 0.0
0.38ProHis: 0.38 ± 0.0
2.471ProIle: 2.471 ± 0.0
2.091ProLys: 2.091 ± 0.0
3.802ProLeu: 3.802 ± 0.0
1.14ProMet: 1.14 ± 0.0
2.471ProAsn: 2.471 ± 0.0
0.38ProPro: 0.38 ± 0.0
1.521ProGln: 1.521 ± 0.0
0.95ProArg: 0.95 ± 0.0
3.041ProSer: 3.041 ± 0.0
2.091ProThr: 2.091 ± 0.0
2.661ProVal: 2.661 ± 0.0
1.14ProTrp: 1.14 ± 0.0
1.331ProTyr: 1.331 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.901GlnAla: 1.901 ± 0.0
0.19GlnCys: 0.19 ± 0.0
1.331GlnAsp: 1.331 ± 0.0
1.711GlnGlu: 1.711 ± 0.0
0.95GlnPhe: 0.95 ± 0.0
0.76GlnGly: 0.76 ± 0.0
0.19GlnHis: 0.19 ± 0.0
2.471GlnIle: 2.471 ± 0.0
1.711GlnLys: 1.711 ± 0.0
2.661GlnLeu: 2.661 ± 0.0
0.76GlnMet: 0.76 ± 0.0
1.331GlnAsn: 1.331 ± 0.0
0.95GlnPro: 0.95 ± 0.0
0.38GlnGln: 0.38 ± 0.0
2.281GlnArg: 2.281 ± 0.0
2.091GlnSer: 2.091 ± 0.0
1.711GlnThr: 1.711 ± 0.0
2.471GlnVal: 2.471 ± 0.0
0.38GlnTrp: 0.38 ± 0.0
1.14GlnTyr: 1.14 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.901ArgAla: 1.901 ± 0.0
0.76ArgCys: 0.76 ± 0.0
2.661ArgAsp: 2.661 ± 0.0
2.091ArgGlu: 2.091 ± 0.0
1.901ArgPhe: 1.901 ± 0.0
2.281ArgGly: 2.281 ± 0.0
2.091ArgHis: 2.091 ± 0.0
2.661ArgIle: 2.661 ± 0.0
4.562ArgLys: 4.562 ± 0.0
5.702ArgLeu: 5.702 ± 0.0
1.14ArgMet: 1.14 ± 0.0
1.901ArgAsn: 1.901 ± 0.0
1.711ArgPro: 1.711 ± 0.0
2.851ArgGln: 2.851 ± 0.0
1.14ArgArg: 1.14 ± 0.0
2.091ArgSer: 2.091 ± 0.0
2.281ArgThr: 2.281 ± 0.0
2.281ArgVal: 2.281 ± 0.0
0.19ArgTrp: 0.19 ± 0.0
2.281ArgTyr: 2.281 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.132SerAla: 5.132 ± 0.0
1.14SerCys: 1.14 ± 0.0
5.322SerAsp: 5.322 ± 0.0
3.802SerGlu: 3.802 ± 0.0
1.711SerPhe: 1.711 ± 0.0
5.322SerGly: 5.322 ± 0.0
1.331SerHis: 1.331 ± 0.0
2.661SerIle: 2.661 ± 0.0
5.892SerLys: 5.892 ± 0.0
6.082SerLeu: 6.082 ± 0.0
1.331SerMet: 1.331 ± 0.0
3.611SerAsn: 3.611 ± 0.0
1.901SerPro: 1.901 ± 0.0
0.95SerGln: 0.95 ± 0.0
3.802SerArg: 3.802 ± 0.0
4.562SerSer: 4.562 ± 0.0
5.132SerThr: 5.132 ± 0.0
6.082SerVal: 6.082 ± 0.0
1.521SerTrp: 1.521 ± 0.0
4.182SerTyr: 4.182 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.421ThrAla: 3.421 ± 0.0
1.711ThrCys: 1.711 ± 0.0
3.041ThrAsp: 3.041 ± 0.0
3.611ThrGlu: 3.611 ± 0.0
3.041ThrPhe: 3.041 ± 0.0
3.992ThrGly: 3.992 ± 0.0
1.711ThrHis: 1.711 ± 0.0
3.041ThrIle: 3.041 ± 0.0
4.182ThrLys: 4.182 ± 0.0
5.512ThrLeu: 5.512 ± 0.0
2.471ThrMet: 2.471 ± 0.0
3.231ThrAsn: 3.231 ± 0.0
2.471ThrPro: 2.471 ± 0.0
1.901ThrGln: 1.901 ± 0.0
3.421ThrArg: 3.421 ± 0.0
5.322ThrSer: 5.322 ± 0.0
3.992ThrThr: 3.992 ± 0.0
4.942ThrVal: 4.942 ± 0.0
0.57ThrTrp: 0.57 ± 0.0
2.851ThrTyr: 2.851 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
3.611ValAla: 3.611 ± 0.0
0.76ValCys: 0.76 ± 0.0
5.892ValAsp: 5.892 ± 0.0
3.992ValGlu: 3.992 ± 0.0
1.14ValPhe: 1.14 ± 0.0
2.851ValGly: 2.851 ± 0.0
2.661ValHis: 2.661 ± 0.0
4.182ValIle: 4.182 ± 0.0
6.653ValLys: 6.653 ± 0.0
6.463ValLeu: 6.463 ± 0.0
1.14ValMet: 1.14 ± 0.0
5.892ValAsn: 5.892 ± 0.0
2.471ValPro: 2.471 ± 0.0
1.901ValGln: 1.901 ± 0.0
2.851ValArg: 2.851 ± 0.0
6.653ValSer: 6.653 ± 0.0
4.752ValThr: 4.752 ± 0.0
6.843ValVal: 6.843 ± 0.0
0.38ValTrp: 0.38 ± 0.0
3.611ValTyr: 3.611 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.76TrpAla: 0.76 ± 0.0
0.57TrpCys: 0.57 ± 0.0
0.76TrpAsp: 0.76 ± 0.0
0.19TrpGlu: 0.19 ± 0.0
0.76TrpPhe: 0.76 ± 0.0
0.38TrpGly: 0.38 ± 0.0
0.76TrpHis: 0.76 ± 0.0
0.95TrpIle: 0.95 ± 0.0
0.19TrpLys: 0.19 ± 0.0
1.521TrpLeu: 1.521 ± 0.0
0.57TrpMet: 0.57 ± 0.0
0.19TrpAsn: 0.19 ± 0.0
0.57TrpPro: 0.57 ± 0.0
0.38TrpGln: 0.38 ± 0.0
0.57TrpArg: 0.57 ± 0.0
1.331TrpSer: 1.331 ± 0.0
0.76TrpThr: 0.76 ± 0.0
1.521TrpVal: 1.521 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.331TrpTyr: 1.331 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.091TyrAla: 2.091 ± 0.0
0.57TyrCys: 0.57 ± 0.0
2.661TyrAsp: 2.661 ± 0.0
3.041TyrGlu: 3.041 ± 0.0
0.95TyrPhe: 0.95 ± 0.0
2.281TyrGly: 2.281 ± 0.0
0.95TyrHis: 0.95 ± 0.0
1.901TyrIle: 1.901 ± 0.0
3.611TyrLys: 3.611 ± 0.0
2.091TyrLeu: 2.091 ± 0.0
0.57TyrMet: 0.57 ± 0.0
4.752TyrAsn: 4.752 ± 0.0
0.95TyrPro: 0.95 ± 0.0
1.331TyrGln: 1.331 ± 0.0
2.091TyrArg: 2.091 ± 0.0
3.231TyrSer: 3.231 ± 0.0
2.471TyrThr: 2.471 ± 0.0
3.421TyrVal: 3.421 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
1.521TyrTyr: 1.521 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (5262 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski