Bordetella genomosp. 9

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4089 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W6Z2N7|A0A1W6Z2N7_9BORD Uncharacterized protein OS=Bordetella genomosp. 9 OX=1416803 GN=CAL13_16565 PE=4 SV=1
MM1 pKa = 6.51THH3 pKa = 6.28VVTEE7 pKa = 3.94NCIKK11 pKa = 10.53CKK13 pKa = 10.04YY14 pKa = 7.62TDD16 pKa = 4.08CVDD19 pKa = 3.61VCPVDD24 pKa = 4.18CFRR27 pKa = 11.84EE28 pKa = 4.9GPNFLVIDD36 pKa = 4.26PDD38 pKa = 3.65EE39 pKa = 5.79CIDD42 pKa = 3.87CAVCIPEE49 pKa = 4.56CPANAIYY56 pKa = 10.74AEE58 pKa = 4.15EE59 pKa = 5.28DD60 pKa = 3.68VPQDD64 pKa = 3.12QLQFIKK70 pKa = 10.9LNAEE74 pKa = 3.91LATEE78 pKa = 4.67FTSISRR84 pKa = 11.84AKK86 pKa = 10.48KK87 pKa = 9.8PLDD90 pKa = 5.53DD91 pKa = 4.49ADD93 pKa = 3.74EE94 pKa = 4.53WNGKK98 pKa = 7.58PDD100 pKa = 3.28KK101 pKa = 10.81LQYY104 pKa = 10.42LEE106 pKa = 4.32KK107 pKa = 10.85

Molecular weight: 12.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W6Z4Z8|A0A1W6Z4Z8_9BORD ABC transporter ATP-binding protein OS=Bordetella genomosp. 9 OX=1416803 GN=CAL13_00530 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.39TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.65GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4089

0

4089

1354728

29

2996

331.3

35.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.317 ± 0.061

0.9 ± 0.012

5.522 ± 0.031

5.018 ± 0.042

3.321 ± 0.02

8.578 ± 0.039

2.198 ± 0.018

4.509 ± 0.025

2.74 ± 0.034

10.387 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.526 ± 0.02

2.513 ± 0.025

5.638 ± 0.029

3.698 ± 0.024

7.692 ± 0.042

5.053 ± 0.027

5.014 ± 0.034

7.578 ± 0.03

1.415 ± 0.017

2.381 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski