Lynx canadensis faeces associated genomovirus CL5 48

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus lynca3

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5CJ25|A0A2Z5CJ25_9VIRU Capsid protein OS=Lynx canadensis faeces associated genomovirus CL5 48 OX=2219132 PE=4 SV=1
MM1 pKa = 8.1PSFLCNARR9 pKa = 11.84HH10 pKa = 6.08FLITYY15 pKa = 7.25AQCGDD20 pKa = 3.49LSEE23 pKa = 4.24WDD25 pKa = 3.47VLDD28 pKa = 4.18RR29 pKa = 11.84FSEE32 pKa = 4.18LGAEE36 pKa = 4.36CIIARR41 pKa = 11.84EE42 pKa = 3.95YY43 pKa = 10.86HH44 pKa = 6.71ADD46 pKa = 3.65LGLHH50 pKa = 5.8LHH52 pKa = 5.84VFVDD56 pKa = 4.55FGRR59 pKa = 11.84KK60 pKa = 7.9FRR62 pKa = 11.84SRR64 pKa = 11.84RR65 pKa = 11.84VDD67 pKa = 2.87IFDD70 pKa = 3.35VAGRR74 pKa = 11.84HH75 pKa = 5.17PNIKK79 pKa = 9.65RR80 pKa = 11.84SYY82 pKa = 7.64GTPEE86 pKa = 3.49KK87 pKa = 10.79GYY89 pKa = 10.83DD90 pKa = 3.43YY91 pKa = 10.61AIKK94 pKa = 10.61DD95 pKa = 3.82GEE97 pKa = 4.57VVAGGLEE104 pKa = 4.19RR105 pKa = 11.84PDD107 pKa = 3.36GTFGSGKK114 pKa = 10.5SFDD117 pKa = 3.78LWSQITGAGDD127 pKa = 3.63RR128 pKa = 11.84EE129 pKa = 4.5EE130 pKa = 4.01FWKK133 pKa = 10.86LLEE136 pKa = 4.26EE137 pKa = 4.97LDD139 pKa = 4.44PKK141 pKa = 10.69SLCCSFTQLQKK152 pKa = 9.72YY153 pKa = 9.81ADD155 pKa = 3.24WRR157 pKa = 11.84FAEE160 pKa = 4.5RR161 pKa = 11.84PAVYY165 pKa = 9.52EE166 pKa = 4.15SPGGFEE172 pKa = 4.28FVSGDD177 pKa = 2.87VDD179 pKa = 4.96GRR181 pKa = 11.84DD182 pKa = 3.45QPLSLVLYY190 pKa = 10.24GEE192 pKa = 4.27SRR194 pKa = 11.84TGKK197 pKa = 7.35TLWARR202 pKa = 11.84SLGPHH207 pKa = 7.22IYY209 pKa = 10.46NVGLVSGEE217 pKa = 4.08EE218 pKa = 4.12CMKK221 pKa = 10.78ASSVEE226 pKa = 3.76YY227 pKa = 10.54AIFDD231 pKa = 4.95DD232 pKa = 3.45IRR234 pKa = 11.84GGIKK238 pKa = 9.97FFPAFKK244 pKa = 9.81EE245 pKa = 4.05WLGGQQTVCVKK256 pKa = 10.44RR257 pKa = 11.84LYY259 pKa = 10.36RR260 pKa = 11.84DD261 pKa = 3.27PKK263 pKa = 9.83LIQWGKK269 pKa = 7.93PSIWISNDD277 pKa = 3.18DD278 pKa = 3.94PRR280 pKa = 11.84HH281 pKa = 5.68SMEE284 pKa = 4.21TSDD287 pKa = 4.84VAWLEE292 pKa = 4.27MNCKK296 pKa = 9.48FVEE299 pKa = 3.98INTPIFRR306 pKa = 11.84ANTEE310 pKa = 3.84

Molecular weight: 35.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5CJ25|A0A2Z5CJ25_9VIRU Capsid protein OS=Lynx canadensis faeces associated genomovirus CL5 48 OX=2219132 PE=4 SV=1
MM1 pKa = 7.91AYY3 pKa = 9.72RR4 pKa = 11.84RR5 pKa = 11.84KK6 pKa = 10.24SGSYY10 pKa = 7.85KK11 pKa = 9.99AKK13 pKa = 9.9RR14 pKa = 11.84RR15 pKa = 11.84TRR17 pKa = 11.84RR18 pKa = 11.84SARR21 pKa = 11.84PSRR24 pKa = 11.84STGRR28 pKa = 11.84TRR30 pKa = 11.84PYY32 pKa = 10.44RR33 pKa = 11.84RR34 pKa = 11.84TKK36 pKa = 10.34RR37 pKa = 11.84ISRR40 pKa = 11.84PMSKK44 pKa = 10.11KK45 pKa = 10.18RR46 pKa = 11.84ILNVTSTKK54 pKa = 10.38KK55 pKa = 10.21RR56 pKa = 11.84DD57 pKa = 3.69DD58 pKa = 3.46MSSYY62 pKa = 10.99YY63 pKa = 10.4YY64 pKa = 10.0QANSAGTGYY73 pKa = 11.07NSGFSASVAAGNQTGASSANPRR95 pKa = 11.84TTGYY99 pKa = 9.1IWCPTARR106 pKa = 11.84DD107 pKa = 4.26FTSSTAGGKK116 pKa = 10.78GNVSDD121 pKa = 3.75QATRR125 pKa = 11.84TASTCYY131 pKa = 9.18MRR133 pKa = 11.84GIAEE137 pKa = 4.56RR138 pKa = 11.84IEE140 pKa = 4.16IQTSTGIPWQWRR152 pKa = 11.84RR153 pKa = 11.84ICFKK157 pKa = 10.93YY158 pKa = 10.29RR159 pKa = 11.84GNLYY163 pKa = 10.42GGNGNSQAGAYY174 pKa = 6.32QTHH177 pKa = 6.93IEE179 pKa = 4.3TSNGFQRR186 pKa = 11.84VSVQFTDD193 pKa = 3.57TTATGNSIEE202 pKa = 4.15NSLTNLIFRR211 pKa = 11.84GTPGSGDD218 pKa = 2.59WFDD221 pKa = 4.32YY222 pKa = 10.64MNAPLDD228 pKa = 3.51PTRR231 pKa = 11.84IDD233 pKa = 2.7ICYY236 pKa = 10.3DD237 pKa = 3.08RR238 pKa = 11.84QTVVSSGNASGKK250 pKa = 9.93IFAKK254 pKa = 10.58KK255 pKa = 9.65LWHH258 pKa = 6.58PMNKK262 pKa = 9.58NLVYY266 pKa = 10.81DD267 pKa = 4.53DD268 pKa = 5.22DD269 pKa = 4.4EE270 pKa = 5.12QGGTEE275 pKa = 3.74SSTYY279 pKa = 10.23YY280 pKa = 10.0SQHH283 pKa = 5.68GKK285 pKa = 9.84QGMGDD290 pKa = 3.66YY291 pKa = 10.84YY292 pKa = 10.49IVDD295 pKa = 4.52FFKK298 pKa = 11.07AGIGAAQADD307 pKa = 3.89QLSFEE312 pKa = 4.57PQSTLYY318 pKa = 9.41WHH320 pKa = 7.02EE321 pKa = 4.09KK322 pKa = 9.32

Molecular weight: 35.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

632

310

322

316.0

35.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.804 ± 0.649

1.899 ± 0.444

6.171 ± 0.813

4.905 ± 1.637

4.905 ± 1.007

9.652 ± 0.193

1.741 ± 0.337

5.063 ± 0.064

5.222 ± 0.039

5.38 ± 1.748

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.741 ± 0.293

3.797 ± 1.002

3.956 ± 0.365

3.797 ± 0.792

7.753 ± 0.637

9.019 ± 1.251

6.646 ± 2.016

4.272 ± 0.999

2.373 ± 0.345

4.905 ± 0.883
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski