Sumatran orang-utan polyomavirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Alphapolyomavirus; Pongo abelii polyomavirus 1

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C9X3W9|C9X3W9_9POLY Minor capsid protein VP2 OS=Sumatran orang-utan polyomavirus OX=1604875 GN=VP3 PE=3 SV=1
MM1 pKa = 7.49GGVISLIVDD10 pKa = 4.19IIEE13 pKa = 4.01LTAEE17 pKa = 3.97VTAATGFTVEE27 pKa = 5.01AIINGEE33 pKa = 3.69ALAAVEE39 pKa = 4.4AQLSSLATVEE49 pKa = 4.17GLSGVEE55 pKa = 4.03ALASLGITAEE65 pKa = 4.01QYY67 pKa = 10.29TFLTSVPGMLSNAVGLGVVFQTVSGASALVTAGIATSYY105 pKa = 10.37AKK107 pKa = 10.13EE108 pKa = 3.83VSVVNRR114 pKa = 11.84NMALIPWRR122 pKa = 11.84DD123 pKa = 3.07PDD125 pKa = 3.8YY126 pKa = 11.55YY127 pKa = 11.05DD128 pKa = 3.18ILFPGVQSFSYY139 pKa = 10.67AIDD142 pKa = 4.39VITNWPGSLFHH153 pKa = 7.48SIGRR157 pKa = 11.84YY158 pKa = 8.43IWDD161 pKa = 3.58SVTSEE166 pKa = 3.54ARR168 pKa = 11.84GQIGHH173 pKa = 7.76ASNQVIVRR181 pKa = 11.84GTYY184 pKa = 10.37AFQDD188 pKa = 3.34SLARR192 pKa = 11.84ILEE195 pKa = 3.92NARR198 pKa = 11.84WVVQAGPTNVYY209 pKa = 10.7NFLDD213 pKa = 3.38SYY215 pKa = 11.2YY216 pKa = 10.71RR217 pKa = 11.84EE218 pKa = 4.43LPPINPAQARR228 pKa = 11.84QMYY231 pKa = 9.76RR232 pKa = 11.84RR233 pKa = 11.84IGQKK237 pKa = 10.04YY238 pKa = 8.62RR239 pKa = 11.84MPRR242 pKa = 11.84EE243 pKa = 3.57AEE245 pKa = 3.61IPDD248 pKa = 3.88RR249 pKa = 11.84YY250 pKa = 10.5NLEE253 pKa = 4.08SSEE256 pKa = 4.41SEE258 pKa = 3.74SGEE261 pKa = 3.86TVEE264 pKa = 5.8FYY266 pKa = 10.85KK267 pKa = 10.99HH268 pKa = 6.39PGGANQRR275 pKa = 11.84VTPDD279 pKa = 2.51WMLPLILGLYY289 pKa = 10.53GDD291 pKa = 4.96ITPTWDD297 pKa = 3.25KK298 pKa = 10.81YY299 pKa = 6.76VHH301 pKa = 5.8EE302 pKa = 4.51VEE304 pKa = 5.83EE305 pKa = 4.21EE306 pKa = 4.26DD307 pKa = 4.0EE308 pKa = 4.22LQKK311 pKa = 10.83KK312 pKa = 8.7KK313 pKa = 10.46RR314 pKa = 11.84RR315 pKa = 11.84RR316 pKa = 11.84LL317 pKa = 3.37

Molecular weight: 34.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C9X3X2|C9X3X2_9POLY Small T antigen OS=Sumatran orang-utan polyomavirus OX=1604875 GN=small T PE=4 SV=1
MM1 pKa = 7.92DD2 pKa = 6.35KK3 pKa = 10.61ILTKK7 pKa = 7.75QQRR10 pKa = 11.84KK11 pKa = 7.55EE12 pKa = 4.17LIVLLDD18 pKa = 4.45IEE20 pKa = 4.49ACDD23 pKa = 3.64YY24 pKa = 11.64GNYY27 pKa = 10.49SIMKK31 pKa = 8.03QQYY34 pKa = 10.42KK35 pKa = 10.27KK36 pKa = 9.56MCLIYY41 pKa = 10.7HH42 pKa = 6.92PDD44 pKa = 3.33KK45 pKa = 11.58GGDD48 pKa = 3.62GEE50 pKa = 5.38KK51 pKa = 9.46MRR53 pKa = 11.84KK54 pKa = 9.29LNSLWQAFNTEE65 pKa = 4.02LLEE68 pKa = 4.44IRR70 pKa = 11.84DD71 pKa = 3.73NRR73 pKa = 11.84FDD75 pKa = 3.76MEE77 pKa = 4.35QVRR80 pKa = 11.84QMDD83 pKa = 3.35IDD85 pKa = 3.59VWDD88 pKa = 4.81DD89 pKa = 3.5LLTVKK94 pKa = 10.32EE95 pKa = 4.1ALDD98 pKa = 4.01DD99 pKa = 4.1FEE101 pKa = 6.77HH102 pKa = 7.31IFVKK106 pKa = 10.23VVPSCFNRR114 pKa = 11.84VAVCKK119 pKa = 9.86CKK121 pKa = 10.74CIVCKK126 pKa = 10.44LRR128 pKa = 11.84QQHH131 pKa = 7.0LIIKK135 pKa = 6.5EE136 pKa = 4.04HH137 pKa = 6.05KK138 pKa = 9.99RR139 pKa = 11.84CVLWGEE145 pKa = 4.4CFCHH149 pKa = 5.97KK150 pKa = 10.46CYY152 pKa = 11.0VEE154 pKa = 4.12WYY156 pKa = 8.85GLSGTEE162 pKa = 4.68QHH164 pKa = 6.79LIWWKK169 pKa = 10.73KK170 pKa = 9.92IIQDD174 pKa = 3.6TPFIFMRR181 pKa = 11.84LNTQDD186 pKa = 3.34TLKK189 pKa = 10.75PSLIYY194 pKa = 10.71

Molecular weight: 23.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1828

194

735

365.6

41.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.853 ± 0.864

2.681 ± 0.831

5.635 ± 0.403

6.729 ± 0.345

4.431 ± 0.711

5.744 ± 0.732

1.641 ± 0.323

5.197 ± 0.814

6.783 ± 1.346

9.136 ± 0.668

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.681 ± 0.248

4.486 ± 0.333

5.47 ± 0.603

4.431 ± 0.289

4.869 ± 0.627

7.002 ± 0.715

5.525 ± 0.744

6.127 ± 0.876

1.477 ± 0.417

4.103 ± 0.51
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski