Candidatus Pantoea edessiphila

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea

Average proteome isoelectric point is 7.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 689 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P5SWX7|A0A2P5SWX7_9GAMM 50S ribosomal protein L35 OS=Candidatus Pantoea edessiphila OX=2044610 GN=rpmI PE=3 SV=1
MM1 pKa = 7.65SDD3 pKa = 2.68IEE5 pKa = 4.12QRR7 pKa = 11.84VKK9 pKa = 10.82KK10 pKa = 10.27IICEE14 pKa = 3.81QLGVKK19 pKa = 9.6EE20 pKa = 4.87DD21 pKa = 3.79EE22 pKa = 4.64VTNSASFVDD31 pKa = 5.15DD32 pKa = 5.07LGADD36 pKa = 3.42SLDD39 pKa = 3.64TVEE42 pKa = 5.9LVMALEE48 pKa = 4.51EE49 pKa = 4.26EE50 pKa = 4.66FDD52 pKa = 3.79TEE54 pKa = 4.56IPDD57 pKa = 3.56EE58 pKa = 4.18EE59 pKa = 4.49AEE61 pKa = 5.03KK62 pKa = 9.69ITTVQAAIDD71 pKa = 4.16YY72 pKa = 11.09INDD75 pKa = 3.53HH76 pKa = 6.58KK77 pKa = 11.52NN78 pKa = 2.85

Molecular weight: 8.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P5SVY9|A0A2P5SVY9_9GAMM Sulfurtransferase complex subunit TusD OS=Candidatus Pantoea edessiphila OX=2044610 GN=CRV10_02520 PE=3 SV=1
MM1 pKa = 7.25ATINQLVRR9 pKa = 11.84KK10 pKa = 8.62PRR12 pKa = 11.84VRR14 pKa = 11.84KK15 pKa = 8.27LTKK18 pKa = 10.4SNVPALEE25 pKa = 4.21ACPQKK30 pKa = 10.67RR31 pKa = 11.84GVCTRR36 pKa = 11.84VYY38 pKa = 7.93TTTPKK43 pKa = 10.54KK44 pKa = 10.26PNSALRR50 pKa = 11.84KK51 pKa = 7.38VCRR54 pKa = 11.84VRR56 pKa = 11.84LTNNFEE62 pKa = 3.91VTSYY66 pKa = 10.76IGGEE70 pKa = 3.94GHH72 pKa = 6.6NLQEE76 pKa = 4.28HH77 pKa = 5.6SVVLIRR83 pKa = 11.84GGRR86 pKa = 11.84VKK88 pKa = 10.7DD89 pKa = 3.73LPGVRR94 pKa = 11.84YY95 pKa = 8.13HH96 pKa = 6.92TIRR99 pKa = 11.84GALDD103 pKa = 3.24CAGVKK108 pKa = 9.53DD109 pKa = 4.11RR110 pKa = 11.84KK111 pKa = 8.34QARR114 pKa = 11.84SKK116 pKa = 11.5YY117 pKa = 9.98GMKK120 pKa = 10.16KK121 pKa = 9.94PKK123 pKa = 10.13SS124 pKa = 3.58

Molecular weight: 13.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

689

0

689

229877

38

1409

333.6

37.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.369 ± 0.067

1.387 ± 0.03

4.658 ± 0.059

5.098 ± 0.078

4.217 ± 0.067

5.896 ± 0.074

2.173 ± 0.034

11.26 ± 0.094

7.819 ± 0.081

10.132 ± 0.101

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.391 ± 0.038

7.25 ± 0.104

3.326 ± 0.044

3.433 ± 0.044

4.221 ± 0.065

6.571 ± 0.058

4.806 ± 0.051

5.358 ± 0.062

1.024 ± 0.032

3.611 ± 0.054
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski