Andrena haemorrhoa nege-like virus

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; unclassified ssRNA positive-strand viruses; Negevirus

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2L2P6U6|A0A2L2P6U6_9VIRU ORF1 OS=Andrena haemorrhoa nege-like virus OX=2094259 PE=4 SV=1
MM1 pKa = 7.29SPLRR5 pKa = 11.84VFVLSYY11 pKa = 10.62LVSFGLSEE19 pKa = 4.09FTTLLGNLPDD29 pKa = 3.94EE30 pKa = 4.49VLEE33 pKa = 4.19QIQVTEE39 pKa = 3.74DD40 pKa = 3.15RR41 pKa = 11.84YY42 pKa = 9.86RR43 pKa = 11.84TFLDD47 pKa = 3.94YY48 pKa = 11.55YY49 pKa = 10.42DD50 pKa = 3.92TADD53 pKa = 3.25VKK55 pKa = 11.19AYY57 pKa = 10.27DD58 pKa = 4.44LSWASKK64 pKa = 9.22FFKK67 pKa = 10.83DD68 pKa = 4.09PVCHH72 pKa = 6.34NGWVLHH78 pKa = 6.01LLSNSAFRR86 pKa = 11.84DD87 pKa = 3.67EE88 pKa = 5.22YY89 pKa = 8.99YY90 pKa = 10.9LCVRR94 pKa = 11.84TEE96 pKa = 4.16GNKK99 pKa = 9.54KK100 pKa = 10.14RR101 pKa = 11.84LIEE104 pKa = 4.08TTQLRR109 pKa = 11.84FSDD112 pKa = 3.51QQQWIFSDD120 pKa = 3.35ADD122 pKa = 3.52NQVGVIVLEE131 pKa = 3.7LDD133 pKa = 3.3IPNKK137 pKa = 10.47YY138 pKa = 9.95IFYY141 pKa = 10.53KK142 pKa = 10.94DD143 pKa = 3.59GDD145 pKa = 4.47DD146 pKa = 5.61LYY148 pKa = 8.68MTTPMCMSNHH158 pKa = 6.31YY159 pKa = 10.38YY160 pKa = 9.51LTDD163 pKa = 3.85DD164 pKa = 4.9KK165 pKa = 10.82IFPPEE170 pKa = 3.74PPIEE174 pKa = 4.15NKK176 pKa = 10.39KK177 pKa = 10.51NFIKK181 pKa = 10.79YY182 pKa = 9.84FYY184 pKa = 9.35TYY186 pKa = 7.76QCRR189 pKa = 11.84PVRR192 pKa = 11.84VHH194 pKa = 6.08NTLKK198 pKa = 10.34QLPIEE203 pKa = 4.53VKK205 pKa = 8.77WRR207 pKa = 11.84VAGGQGYY214 pKa = 9.14SPEE217 pKa = 3.91YY218 pKa = 10.86VVFLEE223 pKa = 5.62DD224 pKa = 3.43AFKK227 pKa = 11.45SNLLRR232 pKa = 11.84QLDD235 pKa = 3.45QDD237 pKa = 3.87AFVPTDD243 pKa = 3.41NLYY246 pKa = 10.85YY247 pKa = 10.8SPDD250 pKa = 3.61YY251 pKa = 10.96NVTIMDD257 pKa = 4.1TPSVYY262 pKa = 10.2AVKK265 pKa = 10.54YY266 pKa = 10.4LNHH269 pKa = 6.58LPDD272 pKa = 3.28YY273 pKa = 9.91EE274 pKa = 5.15IIYY277 pKa = 10.12FEE279 pKa = 5.68HH280 pKa = 5.95ITSNFFLDD288 pKa = 4.87LIEE291 pKa = 4.6FVLDD295 pKa = 3.58RR296 pKa = 11.84VISLIVTILSTIFNFVLEE314 pKa = 5.08KK315 pKa = 10.23INQYY319 pKa = 9.89VFSNIPYY326 pKa = 8.12YY327 pKa = 10.66FKK329 pKa = 10.9SFYY332 pKa = 11.0EE333 pKa = 4.45FFFSLDD339 pKa = 3.55PYY341 pKa = 11.28VKK343 pKa = 9.92FLIMSFVLIYY353 pKa = 10.55IKK355 pKa = 7.44TTKK358 pKa = 10.25FIKK361 pKa = 10.01TIFLVFLLTLFTYY374 pKa = 10.89NKK376 pKa = 9.01LTT378 pKa = 3.52

Molecular weight: 44.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2L2P6U8|A0A2L2P6U8_9VIRU ORF3 OS=Andrena haemorrhoa nege-like virus OX=2094259 PE=4 SV=1
MM1 pKa = 7.24SQRR4 pKa = 11.84KK5 pKa = 7.17QAISSAVRR13 pKa = 11.84RR14 pKa = 11.84TTVQPVVVKK23 pKa = 9.94PKK25 pKa = 10.59GRR27 pKa = 11.84LTSVRR32 pKa = 11.84NKK34 pKa = 9.63FRR36 pKa = 11.84NSVKK40 pKa = 10.79SFDD43 pKa = 3.41LTSFYY48 pKa = 11.02NYY50 pKa = 9.01TLNVVSDD57 pKa = 3.73PTFLLLYY64 pKa = 9.48CLSIYY69 pKa = 10.16ICYY72 pKa = 10.05DD73 pKa = 3.09YY74 pKa = 11.65SNSHH78 pKa = 6.93DD79 pKa = 3.54KK80 pKa = 11.21SHH82 pKa = 6.72IFKK85 pKa = 9.04FTKK88 pKa = 10.53NLVTTFPSLSASACAVYY105 pKa = 10.52NWIVAFIPFLPVILTVPPKK124 pKa = 10.62LRR126 pKa = 11.84IPTFIGTILYY136 pKa = 10.57YY137 pKa = 10.8SFIPEE142 pKa = 3.95RR143 pKa = 11.84TVYY146 pKa = 10.15EE147 pKa = 4.0YY148 pKa = 10.68LIHH151 pKa = 6.5SVCIYY156 pKa = 10.61LFIRR160 pKa = 11.84TRR162 pKa = 11.84NRR164 pKa = 11.84YY165 pKa = 8.64FRR167 pKa = 11.84ILSLSLLFLSYY178 pKa = 11.23VMQFAIPLPANSVLVCNSTTFKK200 pKa = 11.17

Molecular weight: 23.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

2822

200

2244

940.7

109.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.827 ± 0.443

2.091 ± 0.303

5.634 ± 0.894

5.315 ± 1.221

6.697 ± 0.919

2.339 ± 0.349

1.949 ± 0.194

7.583 ± 0.208

6.804 ± 0.663

10.241 ± 0.475

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.232 ± 0.447

7.335 ± 1.126

3.756 ± 0.775

2.835 ± 0.23

3.863 ± 0.522

8.186 ± 0.829

6.201 ± 0.54

6.839 ± 0.898

0.39 ± 0.225

5.882 ± 0.892
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski