Salmonella phage SETP3

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; Salmonella virus SETP3

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 63 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A3EZU9|A3EZU9_9CAUD Uncharacterized protein OS=Salmonella phage SETP3 OX=424944 PE=4 SV=1
MM1 pKa = 7.42VDD3 pKa = 3.56VIKK6 pKa = 10.74RR7 pKa = 11.84RR8 pKa = 11.84IVGVSDD14 pKa = 5.64DD15 pKa = 4.46SPQDD19 pKa = 3.58GQVEE23 pKa = 4.03IDD25 pKa = 4.07MEE27 pKa = 4.4NVMPLRR33 pKa = 11.84FSTGLNDD40 pKa = 3.61TTAVTAGQAITLTVALADD58 pKa = 3.55GMGPKK63 pKa = 8.79TVQWYY68 pKa = 10.18KK69 pKa = 11.37DD70 pKa = 3.34NNAISGATGLTYY82 pKa = 10.67TKK84 pKa = 10.43ANSAAADD91 pKa = 3.42SGTYY95 pKa = 9.87KK96 pKa = 10.55VVAHH100 pKa = 7.07DD101 pKa = 4.42GYY103 pKa = 11.85GNIISDD109 pKa = 3.91STVVTVSS116 pKa = 2.88

Molecular weight: 12.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A3EZS8|A3EZS8_9CAUD Uncharacterized protein OS=Salmonella phage SETP3 OX=424944 PE=4 SV=1
MM1 pKa = 7.61KK2 pKa = 10.34PNDD5 pKa = 3.45LVTWTGRR12 pKa = 11.84NGEE15 pKa = 4.2TRR17 pKa = 11.84HH18 pKa = 5.68GKK20 pKa = 8.04VTSLHH25 pKa = 6.12GIYY28 pKa = 10.5ARR30 pKa = 11.84VEE32 pKa = 3.68RR33 pKa = 11.84WRR35 pKa = 11.84AHH37 pKa = 5.04AKK39 pKa = 9.08KK40 pKa = 9.86PRR42 pKa = 11.84YY43 pKa = 9.56FLMRR47 pKa = 11.84QDD49 pKa = 3.6KK50 pKa = 10.94LIVKK54 pKa = 9.6

Molecular weight: 6.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

63

0

63

13193

35

1032

209.4

23.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.535 ± 0.688

1.054 ± 0.144

5.867 ± 0.235

6.731 ± 0.345

3.608 ± 0.185

7.792 ± 0.283

1.652 ± 0.174

5.033 ± 0.17

6.049 ± 0.352

7.898 ± 0.308

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.645 ± 0.172

4.411 ± 0.217

3.858 ± 0.214

3.729 ± 0.353

5.829 ± 0.204

5.965 ± 0.267

6.337 ± 0.305

7.11 ± 0.297

1.524 ± 0.162

3.373 ± 0.169
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski