Trichechus manatus papillomavirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Rhopapillomavirus; Rhopapillomavirus 2

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F6TNZ5|A0A0F6TNZ5_9PAPI Replication protein E1 OS=Trichechus manatus papillomavirus 3 OX=1429799 GN=E1 PE=3 SV=1
MM1 pKa = 7.49PRR3 pKa = 11.84LRR5 pKa = 11.84TKK7 pKa = 10.47RR8 pKa = 11.84ATVEE12 pKa = 4.0SIYY15 pKa = 10.46RR16 pKa = 11.84SCKK19 pKa = 8.62ATNTCSADD27 pKa = 3.44VINTVEE33 pKa = 4.05QNTLADD39 pKa = 5.17RR40 pKa = 11.84LLKK43 pKa = 9.91WISGLVYY50 pKa = 10.41FGNLGIGTAGGGGGRR65 pKa = 11.84FGYY68 pKa = 10.16GALGGTRR75 pKa = 11.84AAITPSAARR84 pKa = 11.84PPVVPEE90 pKa = 3.71TLGLLEE96 pKa = 4.28VAGPTAGEE104 pKa = 3.89IDD106 pKa = 3.73AATPSIVPLLDD117 pKa = 3.57GSTVEE122 pKa = 4.34SVNIEE127 pKa = 3.95AVAEE131 pKa = 3.99VHH133 pKa = 6.37PAPPAQGTSTLGGVAEE149 pKa = 4.52TTGSILPASDD159 pKa = 4.52PPIQTAVTHH168 pKa = 6.0TEE170 pKa = 4.17FSNPAYY176 pKa = 9.96EE177 pKa = 4.42ITTSTSDD184 pKa = 3.34SVGEE188 pKa = 4.23ISTGDD193 pKa = 3.27HH194 pKa = 5.24MVVVGGGSGQSIGEE208 pKa = 4.47EE209 pKa = 3.81IPLLQLSPDD218 pKa = 3.53NTFDD222 pKa = 3.41TSDD225 pKa = 3.44VLEE228 pKa = 4.42TEE230 pKa = 4.13FGGRR234 pKa = 11.84TSTPDD239 pKa = 3.04TQAPRR244 pKa = 11.84VRR246 pKa = 11.84GDD248 pKa = 2.87RR249 pKa = 11.84GLLYY253 pKa = 10.63SRR255 pKa = 11.84YY256 pKa = 5.88TTQQEE261 pKa = 3.9ITNPTFLSTPYY272 pKa = 11.13DD273 pKa = 3.3LVAYY277 pKa = 8.53NNPAFEE283 pKa = 4.64GTDD286 pKa = 3.31SFDD289 pKa = 3.96FPPAASPYY297 pKa = 8.38TVEE300 pKa = 4.62AAPDD304 pKa = 3.6PAFNDD309 pKa = 3.56ILHH312 pKa = 6.99LGHH315 pKa = 6.96ARR317 pKa = 11.84YY318 pKa = 8.07STTATNRR325 pKa = 11.84VRR327 pKa = 11.84VSRR330 pKa = 11.84LGTRR334 pKa = 11.84PGVRR338 pKa = 11.84TRR340 pKa = 11.84TGTLLTGRR348 pKa = 11.84THH350 pKa = 7.96FYY352 pKa = 10.99QDD354 pKa = 3.25LSSINEE360 pKa = 4.21SLEE363 pKa = 3.81LTPLSEE369 pKa = 5.58RR370 pKa = 11.84IPSSHH375 pKa = 6.15STSTSIGQSIQGYY388 pKa = 8.61PDD390 pKa = 3.87NDD392 pKa = 4.61PIIIDD397 pKa = 3.68SSFEE401 pKa = 4.32IIDD404 pKa = 4.08LNSTSAEE411 pKa = 3.95YY412 pKa = 10.95SEE414 pKa = 6.05ADD416 pKa = 3.69LLDD419 pKa = 3.88IYY421 pKa = 11.28EE422 pKa = 5.56DD423 pKa = 3.8IADD426 pKa = 4.01HH427 pKa = 6.04AQLVIGRR434 pKa = 11.84PRR436 pKa = 11.84HH437 pKa = 4.9PTTVNIPIEE446 pKa = 4.02NTIGKK451 pKa = 8.25DD452 pKa = 3.39TIIDD456 pKa = 3.65SSSGFFVEE464 pKa = 4.51VPEE467 pKa = 4.45VHH469 pKa = 6.11GTTLNPTQTDD479 pKa = 3.45RR480 pKa = 11.84DD481 pKa = 3.56GHH483 pKa = 7.04IFVYY487 pKa = 10.42SPHH490 pKa = 6.11LTSFDD495 pKa = 4.08FLPHH499 pKa = 6.59PSLLKK504 pKa = 10.22RR505 pKa = 11.84KK506 pKa = 9.5RR507 pKa = 11.84KK508 pKa = 9.65RR509 pKa = 11.84SLDD512 pKa = 3.48DD513 pKa = 4.98DD514 pKa = 4.02FTILQQ519 pKa = 3.8

Molecular weight: 55.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F6RB75|A0A0F6RB75_9PAPI Regulatory protein E2 OS=Trichechus manatus papillomavirus 3 OX=1429799 GN=E2 PE=3 SV=1
MM1 pKa = 7.51SLPRR5 pKa = 11.84TLQSLRR11 pKa = 11.84DD12 pKa = 4.11DD13 pKa = 4.24FGLDD17 pKa = 3.12YY18 pKa = 8.47TTFYY22 pKa = 9.74IACVLCGGKK31 pKa = 10.26LGTLDD36 pKa = 4.43LMNFEE41 pKa = 4.8KK42 pKa = 11.1GRR44 pKa = 11.84FFLIWQYY51 pKa = 11.29GLPWACCKK59 pKa = 10.56FCIRR63 pKa = 11.84WWAAKK68 pKa = 10.3DD69 pKa = 3.42RR70 pKa = 11.84VANYY74 pKa = 9.93QYY76 pKa = 10.18SAPVATVEE84 pKa = 4.88AEE86 pKa = 4.43TKK88 pKa = 8.63QTLAEE93 pKa = 4.0LHH95 pKa = 5.97VRR97 pKa = 11.84CIGCLTEE104 pKa = 4.66LTYY107 pKa = 10.87LDD109 pKa = 3.59KK110 pKa = 11.35LRR112 pKa = 11.84IEE114 pKa = 4.26RR115 pKa = 11.84LGACLHH121 pKa = 6.37LCRR124 pKa = 11.84NKK126 pKa = 9.38WRR128 pKa = 11.84GWCSRR133 pKa = 11.84CQRR136 pKa = 11.84QWW138 pKa = 2.67

Molecular weight: 16.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2337

99

628

389.5

43.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.033 ± 0.461

2.525 ± 1.092

6.376 ± 0.367

5.991 ± 0.468

3.894 ± 0.418

6.675 ± 0.796

2.182 ± 0.143

4.707 ± 0.606

4.108 ± 0.801

8.772 ± 0.643

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.369 ± 0.328

3.894 ± 0.553

6.675 ± 1.083

4.279 ± 0.594

6.59 ± 0.57

7.274 ± 0.818

7.745 ± 1.183

5.777 ± 0.33

1.669 ± 0.574

3.466 ± 0.359
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski