Circoviridae 19 LDMD-2013

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; environmental samples

Average proteome isoelectric point is 7.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S5TMY4|S5TMY4_9CIRC ATP-dependent helicase Rep OS=Circoviridae 19 LDMD-2013 OX=1379723 PE=3 SV=1
MM1 pKa = 7.23TSQRR5 pKa = 11.84SRR7 pKa = 11.84AWVFTLNNPTSDD19 pKa = 4.14DD20 pKa = 3.14ISRR23 pKa = 11.84LSEE26 pKa = 4.02CGASYY31 pKa = 10.73GVYY34 pKa = 10.23GRR36 pKa = 11.84EE37 pKa = 3.8TGEE40 pKa = 4.14EE41 pKa = 4.63GTHH44 pKa = 5.99HH45 pKa = 6.1LQGYY49 pKa = 9.67LYY51 pKa = 10.26FKK53 pKa = 9.84SQRR56 pKa = 11.84TLSSLKK62 pKa = 10.19KK63 pKa = 9.66KK64 pKa = 10.52LPRR67 pKa = 11.84AHH69 pKa = 7.1LEE71 pKa = 4.01TRR73 pKa = 11.84KK74 pKa = 10.32GSHH77 pKa = 5.07EE78 pKa = 3.95QARR81 pKa = 11.84DD82 pKa = 3.45YY83 pKa = 10.87CIKK86 pKa = 10.72DD87 pKa = 3.38GNVEE91 pKa = 3.94EE92 pKa = 5.14WGTPPCTQKK101 pKa = 11.01EE102 pKa = 4.11KK103 pKa = 11.38GEE105 pKa = 4.51AGTKK109 pKa = 9.69VYY111 pKa = 10.79RR112 pKa = 11.84EE113 pKa = 3.86AWNLAKK119 pKa = 10.28EE120 pKa = 4.14GRR122 pKa = 11.84IEE124 pKa = 4.54EE125 pKa = 3.91IHH127 pKa = 5.22EE128 pKa = 4.17TLRR131 pKa = 11.84LKK133 pKa = 10.87YY134 pKa = 10.68YY135 pKa = 9.49STLKK139 pKa = 10.48KK140 pKa = 9.41IQKK143 pKa = 10.0DD144 pKa = 3.85YY145 pKa = 11.0MVAPPXLDD153 pKa = 3.66YY154 pKa = 11.5FEE156 pKa = 5.68GWWFYY161 pKa = 11.53GPSGTGKK168 pKa = 9.89SRR170 pKa = 11.84KK171 pKa = 9.33ARR173 pKa = 11.84LDD175 pKa = 3.3NPGAYY180 pKa = 9.05IKK182 pKa = 10.54NANKK186 pKa = 9.15WWDD189 pKa = 3.8GYY191 pKa = 10.74QGQDD195 pKa = 3.49VVIIDD200 pKa = 3.82EE201 pKa = 4.52WSPSHH206 pKa = 6.99SVLAHH211 pKa = 6.08HH212 pKa = 6.83LKK214 pKa = 10.47VWVDD218 pKa = 3.46HH219 pKa = 5.91YY220 pKa = 11.87AFNAEE225 pKa = 4.26VKK227 pKa = 9.79GGAMMIRR234 pKa = 11.84PKK236 pKa = 10.63KK237 pKa = 10.66VIITSNYY244 pKa = 8.44TIRR247 pKa = 11.84EE248 pKa = 4.4CFTEE252 pKa = 4.14EE253 pKa = 4.1QDD255 pKa = 3.92YY256 pKa = 11.42LPLTRR261 pKa = 11.84RR262 pKa = 11.84FTEE265 pKa = 4.05VPFGHH270 pKa = 6.82RR271 pKa = 11.84GGYY274 pKa = 9.8VSDD277 pKa = 4.34FGMEE281 pKa = 4.0ISQQ284 pKa = 3.97

Molecular weight: 32.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S5TMY4|S5TMY4_9CIRC ATP-dependent helicase Rep OS=Circoviridae 19 LDMD-2013 OX=1379723 PE=3 SV=1
MM1 pKa = 7.23TSQRR5 pKa = 11.84SRR7 pKa = 11.84AWVFTLNNPTSDD19 pKa = 4.14DD20 pKa = 3.14ISRR23 pKa = 11.84LSEE26 pKa = 4.02CGASYY31 pKa = 10.73GVYY34 pKa = 10.23GRR36 pKa = 11.84EE37 pKa = 3.8TGEE40 pKa = 4.14EE41 pKa = 4.63GTHH44 pKa = 5.99HH45 pKa = 6.1LQGYY49 pKa = 9.67LYY51 pKa = 10.26FKK53 pKa = 9.84SQRR56 pKa = 11.84TLSSLKK62 pKa = 10.19KK63 pKa = 9.66KK64 pKa = 10.52LPRR67 pKa = 11.84AHH69 pKa = 7.1LEE71 pKa = 4.01TRR73 pKa = 11.84KK74 pKa = 10.32GSHH77 pKa = 5.07EE78 pKa = 3.95QARR81 pKa = 11.84DD82 pKa = 3.45YY83 pKa = 10.87CIKK86 pKa = 10.72DD87 pKa = 3.38GNVEE91 pKa = 3.94EE92 pKa = 5.14WGTPPCTQKK101 pKa = 11.01EE102 pKa = 4.11KK103 pKa = 11.38GEE105 pKa = 4.51AGTKK109 pKa = 9.69VYY111 pKa = 10.79RR112 pKa = 11.84EE113 pKa = 3.86AWNLAKK119 pKa = 10.28EE120 pKa = 4.14GRR122 pKa = 11.84IEE124 pKa = 4.54EE125 pKa = 3.91IHH127 pKa = 5.22EE128 pKa = 4.17TLRR131 pKa = 11.84LKK133 pKa = 10.87YY134 pKa = 10.68YY135 pKa = 9.49STLKK139 pKa = 10.48KK140 pKa = 9.41IQKK143 pKa = 10.0DD144 pKa = 3.85YY145 pKa = 11.0MVAPPXLDD153 pKa = 3.66YY154 pKa = 11.5FEE156 pKa = 5.68GWWFYY161 pKa = 11.53GPSGTGKK168 pKa = 9.89SRR170 pKa = 11.84KK171 pKa = 9.33ARR173 pKa = 11.84LDD175 pKa = 3.3NPGAYY180 pKa = 9.05IKK182 pKa = 10.54NANKK186 pKa = 9.15WWDD189 pKa = 3.8GYY191 pKa = 10.74QGQDD195 pKa = 3.49VVIIDD200 pKa = 3.82EE201 pKa = 4.52WSPSHH206 pKa = 6.99SVLAHH211 pKa = 6.08HH212 pKa = 6.83LKK214 pKa = 10.47VWVDD218 pKa = 3.46HH219 pKa = 5.91YY220 pKa = 11.87AFNAEE225 pKa = 4.26VKK227 pKa = 9.79GGAMMIRR234 pKa = 11.84PKK236 pKa = 10.63KK237 pKa = 10.66VIITSNYY244 pKa = 8.44TIRR247 pKa = 11.84EE248 pKa = 4.4CFTEE252 pKa = 4.14EE253 pKa = 4.1QDD255 pKa = 3.92YY256 pKa = 11.42LPLTRR261 pKa = 11.84RR262 pKa = 11.84FTEE265 pKa = 4.05VPFGHH270 pKa = 6.82RR271 pKa = 11.84GGYY274 pKa = 9.8VSDD277 pKa = 4.34FGMEE281 pKa = 4.0ISQQ284 pKa = 3.97

Molecular weight: 32.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

284

284

284

284.0

32.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.282 ± 0.0

1.408 ± 0.0

4.577 ± 0.0

8.099 ± 0.0

3.169 ± 0.0

8.803 ± 0.0

3.521 ± 0.0

4.577 ± 0.0

7.746 ± 0.0

6.338 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.761 ± 0.0

3.169 ± 0.0

4.225 ± 0.0

3.521 ± 0.0

6.338 ± 0.0

6.69 ± 0.0

6.338 ± 0.0

4.93 ± 0.0

3.169 ± 0.0

5.986 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski