Bandicoot papillomatosis carcinomatosis virus type 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; unclassified Papillomaviridae; non-primate mammal papillomaviruses

Average proteome isoelectric point is 5.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A9QH33|A9QH33_9PAPI Putative small T antigen OS=Bandicoot papillomatosis carcinomatosis virus type 1 OX=479058 PE=4 SV=1
MM1 pKa = 7.99DD2 pKa = 4.52NSDD5 pKa = 3.62YY6 pKa = 11.73LEE8 pKa = 3.87FLKK11 pKa = 11.28LIGCDD16 pKa = 3.09TCDD19 pKa = 3.45GPEE22 pKa = 4.29NIKK25 pKa = 10.54KK26 pKa = 10.2SYY28 pKa = 10.51RR29 pKa = 11.84KK30 pKa = 9.35AALKK34 pKa = 7.61MHH36 pKa = 7.13PDD38 pKa = 3.3KK39 pKa = 11.49GGSTNAMKK47 pKa = 10.72RR48 pKa = 11.84LNEE51 pKa = 4.01LNQSYY56 pKa = 10.61LEE58 pKa = 4.12YY59 pKa = 10.9GPPQNKK65 pKa = 9.25RR66 pKa = 11.84YY67 pKa = 9.98RR68 pKa = 11.84PTPQYY73 pKa = 11.03EE74 pKa = 3.98EE75 pKa = 5.72DD76 pKa = 3.73LFCYY80 pKa = 10.11EE81 pKa = 5.04SEE83 pKa = 4.87GDD85 pKa = 5.07DD86 pKa = 4.48EE87 pKa = 6.35PDD89 pKa = 3.08TCSYY93 pKa = 10.69NRR95 pKa = 11.84SDD97 pKa = 3.38SGFSEE102 pKa = 5.25GTCPTPDD109 pKa = 3.28PSGFSASNVSFHH121 pKa = 6.09QSCKK125 pKa = 9.41NVKK128 pKa = 9.87LLLDD132 pKa = 3.28ITEE135 pKa = 4.44TLGHH139 pKa = 6.34GRR141 pKa = 11.84NCAHH145 pKa = 6.49TLEE148 pKa = 6.06AIDD151 pKa = 4.49KK152 pKa = 8.84NNRR155 pKa = 11.84MDD157 pKa = 3.44WEE159 pKa = 4.41LFDD162 pKa = 4.66TFCSTPGNHH171 pKa = 7.0HH172 pKa = 6.62LTLMFIDD179 pKa = 3.86HH180 pKa = 7.48CYY182 pKa = 10.13MKK184 pKa = 10.83LKK186 pKa = 10.29DD187 pKa = 3.95WQWSLMNFVNYY198 pKa = 9.56GPPYY202 pKa = 10.31LEE204 pKa = 4.85EE205 pKa = 4.52IKK207 pKa = 10.62EE208 pKa = 4.02AANGIDD214 pKa = 3.43WSEE217 pKa = 4.2LDD219 pKa = 5.57DD220 pKa = 4.84MIFSS224 pKa = 4.21

Molecular weight: 25.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A9QH33|A9QH33_9PAPI Putative small T antigen OS=Bandicoot papillomatosis carcinomatosis virus type 1 OX=479058 PE=4 SV=1
MM1 pKa = 7.93AIWQPNGKK9 pKa = 9.93VYY11 pKa = 10.68LPPSAPVARR20 pKa = 11.84ILNTEE25 pKa = 4.2EE26 pKa = 4.02YY27 pKa = 9.62IQRR30 pKa = 11.84TSLFYY35 pKa = 10.49HH36 pKa = 7.0ANTEE40 pKa = 3.95RR41 pKa = 11.84LLTVGHH47 pKa = 7.3PYY49 pKa = 10.5FEE51 pKa = 5.06IKK53 pKa = 10.5DD54 pKa = 3.74KK55 pKa = 11.33LDD57 pKa = 3.24QTKK60 pKa = 10.2IGVPKK65 pKa = 10.55VSANQYY71 pKa = 8.75RR72 pKa = 11.84VFRR75 pKa = 11.84IKK77 pKa = 10.92LPDD80 pKa = 4.01PNRR83 pKa = 11.84FALGDD88 pKa = 3.46KK89 pKa = 10.95SFFDD93 pKa = 4.04PEE95 pKa = 4.09KK96 pKa = 10.79EE97 pKa = 3.83RR98 pKa = 11.84LVWGIRR104 pKa = 11.84GLEE107 pKa = 4.05VEE109 pKa = 5.01RR110 pKa = 11.84GQPLNVGSTGNVLYY124 pKa = 11.1NKK126 pKa = 10.13FKK128 pKa = 10.46DD129 pKa = 3.7TEE131 pKa = 4.25NPNNYY136 pKa = 9.73AKK138 pKa = 10.8EE139 pKa = 4.25GDD141 pKa = 3.96DD142 pKa = 3.31EE143 pKa = 4.42RR144 pKa = 11.84QNVSHH149 pKa = 7.54DD150 pKa = 3.82PKK152 pKa = 11.1QMQLLLVGCKK162 pKa = 9.42PATGEE167 pKa = 3.82HH168 pKa = 6.02WDD170 pKa = 3.69AAKK173 pKa = 9.52TCADD177 pKa = 3.85RR178 pKa = 11.84PLNKK182 pKa = 9.83GDD184 pKa = 4.24CPPLEE189 pKa = 4.22LVNTIIEE196 pKa = 4.99DD197 pKa = 3.79GDD199 pKa = 3.82MMDD202 pKa = 4.03IGYY205 pKa = 11.06GNMNFKK211 pKa = 10.8ALTGNKK217 pKa = 9.52SDD219 pKa = 3.65VPLEE223 pKa = 4.02ISRR226 pKa = 11.84STTKK230 pKa = 10.82YY231 pKa = 10.2PDD233 pKa = 3.73FLKK236 pKa = 8.54MTSDD240 pKa = 3.44QYY242 pKa = 11.69GDD244 pKa = 3.6SLFFYY249 pKa = 9.21TKK251 pKa = 10.41KK252 pKa = 9.25EE253 pKa = 3.85STYY256 pKa = 11.18ARR258 pKa = 11.84HH259 pKa = 5.47FWTRR263 pKa = 11.84GGTSGDD269 pKa = 4.63PIPEE273 pKa = 4.32DD274 pKa = 3.79LFVAPTDD281 pKa = 3.54NQKK284 pKa = 9.98ILGSANYY291 pKa = 7.34FTVPSGSLINSEE303 pKa = 3.8AQLFNRR309 pKa = 11.84PYY311 pKa = 8.49WLQRR315 pKa = 11.84ATGQNNGICWNNDD328 pKa = 2.88LFITIVDD335 pKa = 3.46NTRR338 pKa = 11.84NCNFTISVFNKK349 pKa = 9.52ADD351 pKa = 3.47EE352 pKa = 4.72SQGQTYY358 pKa = 10.18KK359 pKa = 10.69SSNYY363 pKa = 9.69SVYY366 pKa = 10.28LRR368 pKa = 11.84HH369 pKa = 6.71VEE371 pKa = 3.92EE372 pKa = 5.04FEE374 pKa = 4.85LNFIFEE380 pKa = 4.24ICKK383 pKa = 10.17VPLKK387 pKa = 10.58PEE389 pKa = 3.88VLAHH393 pKa = 6.38INAMDD398 pKa = 3.85PRR400 pKa = 11.84ILEE403 pKa = 4.23DD404 pKa = 3.06WSLGFIPSNNITLEE418 pKa = 3.66DD419 pKa = 3.77RR420 pKa = 11.84YY421 pKa = 11.14RR422 pKa = 11.84FINSLATRR430 pKa = 11.84CPDD433 pKa = 3.48KK434 pKa = 10.29EE435 pKa = 4.59TPKK438 pKa = 10.71EE439 pKa = 3.96KK440 pKa = 10.25EE441 pKa = 4.08DD442 pKa = 3.91PYY444 pKa = 11.31KK445 pKa = 11.31SNTFWNIDD453 pKa = 3.39LEE455 pKa = 4.32DD456 pKa = 4.2RR457 pKa = 11.84MSSEE461 pKa = 4.26LDD463 pKa = 3.17QYY465 pKa = 11.36PLGRR469 pKa = 11.84KK470 pKa = 8.57FLYY473 pKa = 9.87QSSISTINTIAKK485 pKa = 9.0PRR487 pKa = 11.84TGKK490 pKa = 10.37RR491 pKa = 11.84KK492 pKa = 8.56STTSPTTKK500 pKa = 9.33TKK502 pKa = 10.22RR503 pKa = 11.84RR504 pKa = 11.84KK505 pKa = 9.36

Molecular weight: 57.8 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

1198

224

505

399.3

45.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.756 ± 0.321

1.503 ± 0.652

7.095 ± 0.483

6.678 ± 0.316

4.341 ± 0.352

6.594 ± 0.513

1.753 ± 0.354

6.427 ± 0.961

6.093 ± 0.702

8.097 ± 0.21

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.836 ± 0.436

6.594 ± 0.584

7.346 ± 0.707

2.922 ± 0.253

4.758 ± 0.502

7.012 ± 0.31

7.763 ± 0.76

4.508 ± 0.878

1.085 ± 0.384

3.84 ± 0.384
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski