Parolsenella catena

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Parolsenella

Average proteome isoelectric point is 5.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1584 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G9JXY2|A0A3G9JXY2_9ACTN RNA polymerase sigma-37 factor OS=Parolsenella catena OX=2003188 GN=sigB PE=4 SV=1
MM1 pKa = 7.95DD2 pKa = 6.32PIIISVDD9 pKa = 3.03EE10 pKa = 4.25RR11 pKa = 11.84LAGAGSVLPVAGHH24 pKa = 7.01IDD26 pKa = 3.78DD27 pKa = 5.53DD28 pKa = 4.84SYY30 pKa = 12.17SVGDD34 pKa = 3.68HH35 pKa = 7.2DD36 pKa = 4.84FRR38 pKa = 11.84LPGGIDD44 pKa = 3.49YY45 pKa = 11.23DD46 pKa = 4.54LVLTNAGEE54 pKa = 4.76GILASGIVRR63 pKa = 11.84AHH65 pKa = 6.11VLGTCDD71 pKa = 3.37RR72 pKa = 11.84CLEE75 pKa = 4.22DD76 pKa = 4.85AEE78 pKa = 4.46FDD80 pKa = 3.38IASEE84 pKa = 3.87VDD86 pKa = 3.47EE87 pKa = 4.7YY88 pKa = 11.74FLFEE92 pKa = 4.55APAEE96 pKa = 4.13EE97 pKa = 4.98DD98 pKa = 3.61LSDD101 pKa = 5.94DD102 pKa = 3.64EE103 pKa = 6.06DD104 pKa = 3.85EE105 pKa = 4.7VDD107 pKa = 4.43FSLVGEE113 pKa = 4.4DD114 pKa = 3.35HH115 pKa = 6.96TIDD118 pKa = 3.4LAEE121 pKa = 5.5PIMAAIVMEE130 pKa = 4.39TPFVVLCRR138 pKa = 11.84EE139 pKa = 4.22DD140 pKa = 4.47CKK142 pKa = 11.13GLCPHH147 pKa = 7.15CGANLNEE154 pKa = 4.51GDD156 pKa = 4.28CGCAEE161 pKa = 4.21KK162 pKa = 10.08MASVDD167 pKa = 3.25AATGPFAALAGLRR180 pKa = 11.84LDD182 pKa = 5.36GEE184 pKa = 5.23DD185 pKa = 4.04GDD187 pKa = 4.63SAQDD191 pKa = 3.19

Molecular weight: 20.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G9K9Q8|A0A3G9K9Q8_9ACTN Molybdate ABC transporter substrate-binding protein OS=Parolsenella catena OX=2003188 GN=modA PE=3 SV=1
MM1 pKa = 7.19TARR4 pKa = 11.84FTVIVIAKK12 pKa = 7.22MWNSILSLSFMGAAPFRR29 pKa = 11.84PPRR32 pKa = 11.84QAASVRR38 pKa = 11.84RR39 pKa = 11.84FLAIRR44 pKa = 11.84GAAKK48 pKa = 10.43SLFGFHH54 pKa = 7.22AARR57 pKa = 11.84GRR59 pKa = 11.84LPRR62 pKa = 11.84SRR64 pKa = 11.84APLASPDD71 pKa = 3.63GGPFLASPVPLAATAGRR88 pKa = 11.84PRR90 pKa = 11.84PP91 pKa = 3.68

Molecular weight: 9.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1584

0

1584

527162

42

2467

332.8

36.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.944 ± 0.086

1.622 ± 0.027

6.356 ± 0.047

6.689 ± 0.053

3.266 ± 0.034

8.615 ± 0.059

2.023 ± 0.029

4.608 ± 0.049

3.445 ± 0.048

9.232 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.593 ± 0.028

2.743 ± 0.037

4.331 ± 0.04

2.749 ± 0.029

6.467 ± 0.066

5.856 ± 0.048

5.414 ± 0.048

8.367 ± 0.057

1.058 ± 0.023

2.622 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski