Geobacter sp. DSM 2909

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; unclassified Geobacter

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4159 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T5RE77|A0A2T5RE77_9DELT AlpA family transcriptional regulator OS=Geobacter sp. DSM 2909 OX=2135459 GN=C7376_101171 PE=4 SV=1
MM1 pKa = 7.86DD2 pKa = 4.07FEE4 pKa = 5.16EE5 pKa = 4.7PQFHH9 pKa = 6.35YY10 pKa = 10.58WDD12 pKa = 3.93VFPKK16 pKa = 8.94TVKK19 pKa = 10.41VSLTGWSVTIPLSVRR34 pKa = 11.84GAPTGQIEE42 pKa = 4.79FEE44 pKa = 4.35SADD47 pKa = 3.89SNIAWVDD54 pKa = 2.94EE55 pKa = 4.16DD56 pKa = 4.31GRR58 pKa = 11.84LNLGWQAGATVVMAYY73 pKa = 10.32DD74 pKa = 3.47SEE76 pKa = 4.47NRR78 pKa = 11.84DD79 pKa = 3.3SVRR82 pKa = 11.84YY83 pKa = 8.89IQVEE87 pKa = 4.31VVDD90 pKa = 3.91YY91 pKa = 9.97GQNGGGGYY99 pKa = 10.25DD100 pKa = 3.45GYY102 pKa = 11.49GYY104 pKa = 10.28DD105 pKa = 3.86YY106 pKa = 8.18PTT108 pKa = 3.79

Molecular weight: 12.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T5R736|A0A2T5R736_9DELT L D-transpeptidase ErfK/SrfK OS=Geobacter sp. DSM 2909 OX=2135459 GN=C7376_11459 PE=3 SV=1
MM1 pKa = 8.14DD2 pKa = 4.81SLRR5 pKa = 11.84KK6 pKa = 9.49LVAGVTRR13 pKa = 11.84RR14 pKa = 11.84YY15 pKa = 9.44PIHH18 pKa = 6.49TKK20 pKa = 10.67SFMTWKK26 pKa = 10.51SRR28 pKa = 11.84FHH30 pKa = 7.58RR31 pKa = 11.84SNTDD35 pKa = 2.61GNGFRR40 pKa = 11.84RR41 pKa = 11.84FLSAIGTICADD52 pKa = 3.72KK53 pKa = 10.71PLADD57 pKa = 3.75PCRR60 pKa = 11.84EE61 pKa = 3.64LRR63 pKa = 11.84IRR65 pKa = 11.84AFLYY69 pKa = 10.71VDD71 pKa = 4.69FIWRR75 pKa = 11.84GCC77 pKa = 3.51

Molecular weight: 9.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4159

0

4159

1352630

29

3828

325.2

35.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.011 ± 0.041

1.32 ± 0.017

5.461 ± 0.038

6.799 ± 0.041

4.179 ± 0.026

8.13 ± 0.056

1.942 ± 0.017

5.959 ± 0.029

4.747 ± 0.039

10.086 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.449 ± 0.016

3.127 ± 0.03

4.628 ± 0.028

2.724 ± 0.023

6.981 ± 0.043

6.053 ± 0.03

5.267 ± 0.029

7.299 ± 0.03

1.046 ± 0.014

2.789 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski