Macaca mulatta papillomavirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; unclassified Papillomaviridae; primate papillomaviruses

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A385AHR9|A0A385AHR9_9PAPI Regulatory protein E2 OS=Macaca mulatta papillomavirus 3 OX=2294151 GN=E2 PE=3 SV=1
MM1 pKa = 7.45HH2 pKa = 7.27GAKK5 pKa = 8.12PTLSDD10 pKa = 2.97IVLALEE16 pKa = 4.55PPPEE20 pKa = 4.43AVSLHH25 pKa = 6.54CNEE28 pKa = 4.44QLDD31 pKa = 4.0SSEE34 pKa = 5.14EE35 pKa = 3.92EE36 pKa = 4.73DD37 pKa = 4.74GDD39 pKa = 5.08DD40 pKa = 3.69GLDD43 pKa = 3.62YY44 pKa = 10.69IVEE47 pKa = 4.24GDD49 pKa = 4.17EE50 pKa = 4.7EE51 pKa = 5.46DD52 pKa = 5.52DD53 pKa = 4.78EE54 pKa = 4.49PTEE57 pKa = 4.09PAGQAIYY64 pKa = 10.36RR65 pKa = 11.84VVTSCGEE72 pKa = 3.78CGRR75 pKa = 11.84AVRR78 pKa = 11.84LAVRR82 pKa = 11.84SSEE85 pKa = 3.69ADD87 pKa = 2.88IRR89 pKa = 11.84ALQDD93 pKa = 3.68LLLGSLSIVCPVCAA107 pKa = 4.8

Molecular weight: 11.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A385AHF8|A0A385AHF8_9PAPI Protein E7 OS=Macaca mulatta papillomavirus 3 OX=2294151 GN=E7 PE=3 SV=1
MM1 pKa = 7.34TLNSTLYY8 pKa = 10.1LAPSKK13 pKa = 11.22YY14 pKa = 9.95PLLQLLSSQTPTTPTRR30 pKa = 11.84PIPAAAPPGAPRR42 pKa = 11.84KK43 pKa = 9.78DD44 pKa = 2.96KK45 pKa = 11.02SRR47 pKa = 11.84RR48 pKa = 11.84HH49 pKa = 6.15LYY51 pKa = 11.02LNDD54 pKa = 4.55PDD56 pKa = 5.06PDD58 pKa = 4.14SDD60 pKa = 4.61CSCSSPTLRR69 pKa = 11.84RR70 pKa = 11.84RR71 pKa = 11.84RR72 pKa = 11.84LEE74 pKa = 4.19RR75 pKa = 11.84WDD77 pKa = 3.28GWHH80 pKa = 6.7PQQAPWTVSAKK91 pKa = 10.66GNTVTLTATGVNGPTVSVTLHH112 pKa = 6.06LL113 pKa = 4.6

Molecular weight: 12.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2372

107

649

338.9

37.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.01 ± 0.271

2.53 ± 0.418

6.282 ± 0.507

4.933 ± 0.665

3.373 ± 0.459

7.04 ± 0.455

2.403 ± 0.325

3.668 ± 0.338

4.553 ± 0.704

8.558 ± 0.508

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.813 ± 0.392

2.867 ± 0.441

6.83 ± 0.925

4.637 ± 0.479

5.818 ± 0.231

8.179 ± 0.523

6.492 ± 0.913

6.872 ± 0.39

1.602 ± 0.317

3.541 ± 0.274
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski